Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
COL18A1P39060 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC26.41■■□□□ 1.82
COL18A1P39060 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC26.41■■□□□ 1.82
COL18A1P39060 AL031133.1-201ENST00000406807 723 ntBASIC26.41■■□□□ 1.82
COL18A1P39060 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC26.41■■□□□ 1.82
COL18A1P39060 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
COL18A1P39060 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL18A1P39060 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC26.4■■□□□ 1.82
COL18A1P39060 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
COL18A1P39060 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
COL18A1P39060 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC26.4■■□□□ 1.82
COL18A1P39060 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL18A1P39060 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC26.4■■□□□ 1.82
COL18A1P39060 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC26.4■■□□□ 1.82
COL18A1P39060 AC091390.4-202ENST00000476426 537 ntBASIC26.4■■□□□ 1.82
COL18A1P39060 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC26.4■■□□□ 1.82
COL18A1P39060 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC26.4■■□□□ 1.82
COL18A1P39060 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
COL18A1P39060 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC26.4■■□□□ 1.82
COL18A1P39060 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC26.4■■□□□ 1.82
COL18A1P39060 HLA-A-209ENST00000638375 975 ntBASIC26.4■■□□□ 1.82
COL18A1P39060 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
COL18A1P39060 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL18A1P39060 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
COL18A1P39060 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
COL18A1P39060 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC26.39■■□□□ 1.82
COL18A1P39060 PLK5-205ENST00000642079 1969 ntBASIC26.39■■□□□ 1.82
COL18A1P39060 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC26.39■■□□□ 1.82
COL18A1P39060 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC26.39■■□□□ 1.81
COL18A1P39060 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC26.39■■□□□ 1.81
COL18A1P39060 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
COL18A1P39060 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 YBX1P2-201ENST00000489612 999 ntBASIC26.38■■□□□ 1.81
COL18A1P39060 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC26.38■■□□□ 1.81
COL18A1P39060 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC26.38■■□□□ 1.81
COL18A1P39060 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 FEM1AP4-201ENST00000443167 1987 ntBASIC26.38■■□□□ 1.81
COL18A1P39060 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC26.38■■□□□ 1.81
COL18A1P39060 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC26.38■■□□□ 1.81
COL18A1P39060 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL18A1P39060 DPP3P2-201ENST00000416030 1696 ntBASIC26.38■■□□□ 1.81
COL18A1P39060 TUBB8P6-201ENST00000436895 1288 ntBASIC26.38■■□□□ 1.81
COL18A1P39060 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC26.38■■□□□ 1.81
COL18A1P39060 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC26.38■■□□□ 1.81
COL18A1P39060 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
COL18A1P39060 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC26.37■■□□□ 1.81
COL18A1P39060 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC26.37■■□□□ 1.81
COL18A1P39060 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC26.37■■□□□ 1.81
COL18A1P39060 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL18A1P39060 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL18A1P39060 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC26.37■■□□□ 1.81
COL18A1P39060 UPK3BP1-201ENST00000428678 509 ntBASIC26.37■■□□□ 1.81
COL18A1P39060 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC26.37■■□□□ 1.81
COL18A1P39060 AP000692.2-201ENST00000608391 879 ntBASIC26.37■■□□□ 1.81
COL18A1P39060 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL18A1P39060 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL18A1P39060 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL18A1P39060 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL18A1P39060 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL18A1P39060 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
COL18A1P39060 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL18A1P39060 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL18A1P39060 PTPA-216ENST00000432651 857 ntTSL 2 BASIC26.36■■□□□ 1.81
COL18A1P39060 ATP5G1P1-201ENST00000448724 379 ntBASIC26.36■■□□□ 1.81
COL18A1P39060 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC26.36■■□□□ 1.81
COL18A1P39060 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC26.36■■□□□ 1.81
COL18A1P39060 AC131212.4-201ENST00000623606 975 ntBASIC26.36■■□□□ 1.81
COL18A1P39060 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL18A1P39060 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL18A1P39060 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC26.36■■□□□ 1.81
COL18A1P39060 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
COL18A1P39060 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL18A1P39060 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC26.35■■□□□ 1.81
COL18A1P39060 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL18A1P39060 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC26.35■■□□□ 1.81
COL18A1P39060 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC26.35■■□□□ 1.81
COL18A1P39060 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
COL18A1P39060 ERF-202ENST00000440177 2032 ntTSL 2 BASIC26.35■■□□□ 1.81
COL18A1P39060 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC26.35■■□□□ 1.81
COL18A1P39060 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL18A1P39060 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
COL18A1P39060 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC26.35■■□□□ 1.81
COL18A1P39060 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
COL18A1P39060 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC26.35■■□□□ 1.81
COL18A1P39060 AC007663.1-201ENST00000438948 1240 ntBASIC26.35■■□□□ 1.81
COL18A1P39060 MFAP1P1-201ENST00000442257 1255 ntBASIC26.35■■□□□ 1.81
COL18A1P39060 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
COL18A1P39060 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC26.35■■□□□ 1.81
COL18A1P39060 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC26.35■■□□□ 1.81
COL18A1P39060 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC26.35■■□□□ 1.81
COL18A1P39060 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms