Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
SPENQ96T58 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
SPENQ96T58 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
SPENQ96T58 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SPENQ96T58 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.88■■□□□ 1.41
SPENQ96T58 AL161658.1-201ENST00000623641 1967 ntBASIC23.88■■□□□ 1.41
SPENQ96T58 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
SPENQ96T58 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SPENQ96T58 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.88■■□□□ 1.41
SPENQ96T58 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SPENQ96T58 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SPENQ96T58 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.87■■□□□ 1.41
SPENQ96T58 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SPENQ96T58 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC23.86■■□□□ 1.41
SPENQ96T58 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.85■■□□□ 1.41
SPENQ96T58 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SPENQ96T58 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.85■■□□□ 1.41
SPENQ96T58 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
SPENQ96T58 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC23.84■■□□□ 1.41
SPENQ96T58 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SPENQ96T58 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SPENQ96T58 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC23.84■■□□□ 1.41
SPENQ96T58 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SPENQ96T58 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SPENQ96T58 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
SPENQ96T58 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.8■■□□□ 1.4
SPENQ96T58 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SPENQ96T58 LINC00273-201ENST00000539813 1452 ntBASIC23.79■■□□□ 1.4
SPENQ96T58 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
SPENQ96T58 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.78■■□□□ 1.4
SPENQ96T58 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
SPENQ96T58 NTF6A-201ENST00000591175 560 ntBASIC23.78■■□□□ 1.4
SPENQ96T58 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
SPENQ96T58 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SPENQ96T58 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
SPENQ96T58 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
SPENQ96T58 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SPENQ96T58 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SPENQ96T58 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.76■■□□□ 1.39
SPENQ96T58 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SPENQ96T58 AC120057.4-201ENST00000624722 1615 ntBASIC23.76■■□□□ 1.39
SPENQ96T58 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC23.76■■□□□ 1.39
SPENQ96T58 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SPENQ96T58 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SPENQ96T58 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SPENQ96T58 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.74■■□□□ 1.39
SPENQ96T58 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.73■■□□□ 1.39
SPENQ96T58 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SPENQ96T58 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SPENQ96T58 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
SPENQ96T58 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.73■■□□□ 1.39
SPENQ96T58 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
SPENQ96T58 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SPENQ96T58 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SPENQ96T58 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SPENQ96T58 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.7■■□□□ 1.38
SPENQ96T58 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.7■■□□□ 1.38
SPENQ96T58 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SPENQ96T58 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SPENQ96T58 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
SPENQ96T58 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SPENQ96T58 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SPENQ96T58 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.68■■□□□ 1.38
SPENQ96T58 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
SPENQ96T58 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SPENQ96T58 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SPENQ96T58 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
SPENQ96T58 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SPENQ96T58 AL033527.3-201ENST00000566366 1196 ntBASIC23.65■■□□□ 1.38
SPENQ96T58 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SPENQ96T58 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SPENQ96T58 AC008813.1-201ENST00000536597 885 ntBASIC23.64■■□□□ 1.38
SPENQ96T58 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.64■■□□□ 1.38
SPENQ96T58 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SPENQ96T58 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
SPENQ96T58 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
SPENQ96T58 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SPENQ96T58 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.63■■□□□ 1.37
SPENQ96T58 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.63■■□□□ 1.37
SPENQ96T58 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.62■■□□□ 1.37
SPENQ96T58 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SPENQ96T58 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SPENQ96T58 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
SPENQ96T58 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.61■■□□□ 1.37
SPENQ96T58 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SPENQ96T58 AC012354.3-201ENST00000623734 483 ntBASIC23.61■■□□□ 1.37
SPENQ96T58 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SPENQ96T58 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SPENQ96T58 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.6■■□□□ 1.37
SPENQ96T58 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC23.59■■□□□ 1.37
SPENQ96T58 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.59■■□□□ 1.37
SPENQ96T58 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SPENQ96T58 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.59■■□□□ 1.37
SPENQ96T58 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SPENQ96T58 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SPENQ96T58 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SPENQ96T58 AC018358.1-201ENST00000631079 1402 ntBASIC23.57■■□□□ 1.36
SPENQ96T58 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SPENQ96T58 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
SPENQ96T58 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms