Protein–RNA interactions for Protein: P05455

SSB, Lupus La protein, humanhuman

Known RBP eCLIP

Length 408 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP05455 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.732e-8■□□□□ 9.6
SSBP05455 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.12■■□□□ 1.612e-8■□□□□ 9.6
SSBP05455 SNRNP70-204ENST00000595231 1673 ntTSL 1 (best)25.07■■□□□ 1.62e-8■□□□□ 9.6
SSBP05455 SNRNP70-209ENST00000601065 1757 ntTSL 324.59■■□□□ 1.532e-8■□□□□ 9.6
SSBP05455 SNRNP70-202ENST00000401730 3144 ntTSL 219.09■□□□□ 0.652e-8■□□□□ 9.6
SSBP05455 SNRNP70-203ENST00000544278 3221 ntTSL 1 (best)17.78■□□□□ 0.442e-8■□□□□ 9.6
SSBP05455 HSPA9-212ENST00000523929 780 ntTSL 415.73■□□□□ 0.119e-12■□□□□ 9.3
SSBP05455 HSPA9-207ENST00000507097 1796 ntTSL 215.29■□□□□ 0.049e-12■□□□□ 9.3
SSBP05455 HSPA9-210ENST00000508003 582 ntTSL 212.42□□□□□ -0.429e-12■□□□□ 9.3
SSBP05455 HSPA9-201ENST00000297185 3321 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.559e-12■□□□□ 9.3
SSBP05455 HSPA9-202ENST00000501917 275 ntTSL 34.14□□□□□ -1.759e-12■□□□□ 9.3
SSBP05455 SNORD63-201ENST00000384262 68 ntBASIC3.53□□□□□ -1.849e-12■□□□□ 9.3
SSBP05455 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.51■□□□□ 0.559e-13■□□□□ 9.2
SSBP05455 SNHG5-203ENST00000420199 1002 ntTSL 317.14■□□□□ 0.339e-13■□□□□ 9.2
SSBP05455 SNHG5-215ENST00000623163 851 ntTSL 516.02■□□□□ 0.169e-13■□□□□ 9.2
SSBP05455 SNHG5-209ENST00000435947 696 ntTSL 215.35■□□□□ 0.059e-13■□□□□ 9.2
SSBP05455 SNHG5-211ENST00000587692 1029 ntTSL 3 BASIC14.43□□□□□ -0.19e-13■□□□□ 9.2
SSBP05455 SNHG5-206ENST00000428833 641 ntTSL 213.52□□□□□ -0.259e-13■□□□□ 9.2
SSBP05455 SNHG5-210ENST00000453754 401 ntTSL 313.47□□□□□ -0.259e-13■□□□□ 9.2
SSBP05455 SNHG5-207ENST00000431043 998 ntTSL 213.26□□□□□ -0.299e-13■□□□□ 9.2
SSBP05455 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC13.26□□□□□ -0.299e-13■□□□□ 9.2
SSBP05455 SNHG5-212ENST00000589187 568 ntTSL 4 BASIC12.88□□□□□ -0.359e-13■□□□□ 9.2
SSBP05455 SNHG5-202ENST00000414002 430 ntTSL 210.8□□□□□ -0.689e-13■□□□□ 9.2
SSBP05455 SNHG5-220ENST00000624128 672 ntTSL 29.8□□□□□ -0.849e-13■□□□□ 9.2
SSBP05455 SNHG5-218ENST00000623901 711 ntTSL 5 BASIC9.18□□□□□ -0.949e-13■□□□□ 9.2
SSBP05455 SNHG5-217ENST00000623650 886 ntTSL 59.06□□□□□ -0.969e-13■□□□□ 9.2
SSBP05455 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC7.96□□□□□ -1.149e-13■□□□□ 9.2
SSBP05455 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC7.28□□□□□ -1.249e-13■□□□□ 9.2
SSBP05455 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.33□□□□□ -1.49e-13■□□□□ 9.2
SSBP05455 SNHG5-216ENST00000623267 374 ntTSL 56.33□□□□□ -1.49e-13■□□□□ 9.2
SSBP05455 SNHG5-205ENST00000427501 680 ntTSL 26.25□□□□□ -1.419e-13■□□□□ 9.2
SSBP05455 SNHG5-208ENST00000433843 388 ntTSL 23.03□□□□□ -1.929e-13■□□□□ 9.2
SSBP05455 CHD8-206ENST00000553870 679 ntTSL 510.32□□□□□ -0.766e-9■□□□□ 8.8
SSBP05455 SNORD9-201ENST00000362566 104 ntBASIC4.01□□□□□ -1.776e-9■□□□□ 8.8
SSBP05455 RPL23A-209ENST00000582736 595 ntTSL 1 (best)16.53■□□□□ 0.244e-8■□□□□ 8.8
SSBP05455 SNORD42B-201ENST00000458893 67 ntBASIC0.36□□□□□ -2.354e-8■□□□□ 8.8
SSBP05455 ACSM3-203ENST00000501740 839 ntTSL 515.79■□□□□ 0.121e-8■□□□□ 8.7
SSBP05455 ACSM3-213ENST00000568235 558 ntTSL 413.59□□□□□ -0.231e-8■□□□□ 8.7
SSBP05455 ACSM3-205ENST00000561584 561 ntTSL 413.11□□□□□ -0.311e-8■□□□□ 8.7
SSBP05455 ACSM3-215ENST00000614721 3311 ntTSL 1 (best)9.83□□□□□ -0.841e-8■□□□□ 8.7
SSBP05455 RPS13-203ENST00000525828 664 ntTSL 219■□□□□ 0.638e-8■□□□□ 8.6
SSBP05455 RPS13-204ENST00000526895 561 ntTSL 315.89■□□□□ 0.138e-8■□□□□ 8.6
SSBP05455 RPS13-209ENST00000533969 355 ntTSL 315.1■□□□□ 0.018e-8■□□□□ 8.6
SSBP05455 RPS13-201ENST00000228140 491 ntTSL 2 BASIC11.56□□□□□ -0.568e-8■□□□□ 8.6
SSBP05455 RPS13-202ENST00000525634 646 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.768e-8■□□□□ 8.6
SSBP05455 RPS13-208ENST00000531908 746 ntTSL 27.91□□□□□ -1.148e-8■□□□□ 8.6
SSBP05455 SNORD14B-201ENST00000364533 90 ntBASIC4.48□□□□□ -1.698e-8■□□□□ 8.6
SSBP05455 SNX5-206ENST00000469704 696 ntTSL 329.33■■■□□ 2.292e-32■□□□□ 8.5
SSBP05455 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.862e-32■□□□□ 8.5
SSBP05455 SNX5-214ENST00000490175 2025 ntTSL 1 (best)17.88■□□□□ 0.452e-32■□□□□ 8.5
SSBP05455 SNX5-204ENST00000431277 840 ntTSL 517.67■□□□□ 0.422e-32■□□□□ 8.5
SSBP05455 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.332e-32■□□□□ 8.5
SSBP05455 SNX5-203ENST00000419004 778 ntTSL 516.6■□□□□ 0.252e-32■□□□□ 8.5
SSBP05455 OVOL2-204ENST00000486776 550 ntTSL 315.81■□□□□ 0.122e-32■□□□□ 8.5
SSBP05455 SNX5-207ENST00000474883 695 ntTSL 56.3□□□□□ -1.42e-32■□□□□ 8.5
SSBP05455 SNORD17-201ENST00000390930 237 ntBASIC3.84□□□□□ -1.792e-32■□□□□ 8.5
SSBP05455 GAS5-225ENST00000454813 621 ntTSL 36.78□□□□□ -1.325e-47■□□□□ 8.2
SSBP05455 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.66□□□□□ -1.345e-47■□□□□ 8.2
SSBP05455 GAS5-207ENST00000422207 643 ntTSL 26.16□□□□□ -1.425e-47■□□□□ 8.2
SSBP05455 GAS5-217ENST00000444470 424 ntTSL 26.16□□□□□ -1.425e-47■□□□□ 8.2
SSBP05455 GAS5-212ENST00000434796 575 ntTSL 23.82□□□□□ -1.85e-47■□□□□ 8.2
SSBP05455 PUM1-202ENST00000373741 4242 ntTSL 1 (best) BASIC13.12□□□□□ -0.313e-7■□□□□ 8.1
SSBP05455 PUM1-201ENST00000257075 5360 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.393e-7■□□□□ 8.1
SSBP05455 PUM1-215ENST00000525948 1103 ntTSL 311.57□□□□□ -0.563e-7■□□□□ 8.1
SSBP05455 PUM1-203ENST00000373742 3515 ntTSL 2 BASIC9.89□□□□□ -0.833e-7■□□□□ 8.1
SSBP05455 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC9.62□□□□□ -0.873e-7■□□□□ 8.1
SSBP05455 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC9.32□□□□□ -0.923e-7■□□□□ 8.1
SSBP05455 PUM1-214ENST00000525843 4528 ntTSL 58.71□□□□□ -1.023e-7■□□□□ 8.1
SSBP05455 PUM1-209ENST00000480602 906 ntTSL 58.54□□□□□ -1.043e-7■□□□□ 8.1
SSBP05455 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.73□□□□□ -1.173e-7■□□□□ 8.1
SSBP05455 PUM1-218ENST00000526215 586 ntTSL 27.26□□□□□ -1.253e-7■□□□□ 8.1
SSBP05455 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC7.08□□□□□ -1.283e-7■□□□□ 8.1
Retrieved 72 of 672 protein–RNA pairs in 16.8 ms