RNA–Protein interactions for RNA: ENST00000614721.1

ACSM3-215, Transcript of acyl-CoA synthetase medium chain family member 3, humanhuman

TSL 1 (best)

Gene ACSM3, Length 3,311 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACSM3-215ENST00000614721 NISCHQ9Y2I1 1504 aa18.96■□□□□ 0.63
ACSM3-215ENST00000614721 DCAF8L2P0C7V8 631 aa16.51■□□□□ 0.23
ACSM3-215ENST00000614721 SHROOM4Q9ULL8 1493 aa16.2■□□□□ 0.18
ACSM3-215ENST00000614721 CCDC180Q9P1Z9 1646 aa16.18■□□□□ 0.18
ACSM3-215ENST00000614721 ABCC9O60706 1549 aa15.97■□□□□ 0.15
ACSM3-215ENST00000614721 ZCCHC6Q5VYS8 1495 aaKnown RBP15.87■□□□□ 0.13
ACSM3-215ENST00000614721 SUPT5HO00267 1087 aaKnown RBP15.64■□□□□ 0.09
ACSM3-215ENST00000614721 SCRIBQ14160 1630 aa15.4■□□□□ 0.06
ACSM3-215ENST00000614721 DCAF1Q9Y4B6 1507 aa15.35■□□□□ 0.05
ACSM3-215ENST00000614721 PABPN1Q86U42 306 aaKnown RBP eCLIP15.29■□□□□ 0.04
ACSM3-215ENST00000614721 NACADO15069 1562 aa15.21■□□□□ 0.03
ACSM3-215ENST00000614721 RB1CC1Q8TDY2 1594 aa15.16■□□□□ 0.02
ACSM3-215ENST00000614721 MYO15BQ96JP2 1530 aa15.09■□□□□ 0.01
ACSM3-215ENST00000614721 CECR2Q9BXF3 1484 aa14.98□□□□□ -0.01
ACSM3-215ENST00000614721 RSF1Q96T23 1441 aaPredicted RBP14.86□□□□□ -0.03
ACSM3-215ENST00000614721 UNC13AQ9UPW8 1703 aa14.83□□□□□ -0.04
ACSM3-215ENST00000614721 MROH2BQ7Z745 1585 aa14.79□□□□□ -0.04
ACSM3-215ENST00000614721 BICRAQ9NZM4 1560 aa14.74□□□□□ -0.05
ACSM3-215ENST00000614721 CHIC1Q5VXU3 224 aa14.68□□□□□ -0.06
ACSM3-215ENST00000614721 WIZO95785 1651 aa14.67□□□□□ -0.06
ACSM3-215ENST00000614721 EHMT2Q96KQ7 1210 aa14.61□□□□□ -0.07
ACSM3-215ENST00000614721 BAZ1AQ9NRL2 1556 aaPredicted RBP14.59□□□□□ -0.07
ACSM3-215ENST00000614721 FAM9AQ8IZU1 332 aaPredicted RBP14.55□□□□□ -0.08
ACSM3-215ENST00000614721 SMARCA4P51532 1647 aa14.53□□□□□ -0.08
ACSM3-215ENST00000614721 TRIM41Q8WV44 630 aa14.48□□□□□ -0.09
ACSM3-215ENST00000614721 LOC105371045A0A1W2PR82 267 aa14.4□□□□□ -0.1
ACSM3-215ENST00000614721 ATAD2BQ9ULI0 1458 aa14.39□□□□□ -0.11
ACSM3-215ENST00000614721 CCDC88BA6NC98 1476 aa14.38□□□□□ -0.11
ACSM3-215ENST00000614721 BAZ1BQ9UIG0 1483 aaKnown RBP14.36□□□□□ -0.11
ACSM3-215ENST00000614721 EIF4G1Q04637 1599 aaKnown RBP14.36□□□□□ -0.11
ACSM3-215ENST00000614721 DNAJC5BQ9UF47 199 aa14.33□□□□□ -0.12
ACSM3-215ENST00000614721 TOP2AP11388 1531 aaKnown RBP14.32□□□□□ -0.12
ACSM3-215ENST00000614721 SMARCA2P51531 1590 aa14.26□□□□□ -0.13
ACSM3-215ENST00000614721 ABCC8Q09428 1581 aa14.23□□□□□ -0.13
ACSM3-215ENST00000614721 CC2D2AQ9P2K1 1620 aa14.19□□□□□ -0.14
ACSM3-215ENST00000614721 NCAPD3P42695 1498 aa14.15□□□□□ -0.14
ACSM3-215ENST00000614721 PEG3Q9GZU2 1588 aa14.14□□□□□ -0.15
ACSM3-215ENST00000614721 RANGAP1P46060 587 aaPredicted RBP14.07□□□□□ -0.16
ACSM3-215ENST00000614721 WRNQ14191 1432 aaPredicted RBP eCLIP14.02□□□□□ -0.17
ACSM3-215ENST00000614721 HMGXB3Q12766 1538 aa14.01□□□□□ -0.17
ACSM3-215ENST00000614721 SOGA1O94964 1423 aa14.01□□□□□ -0.17
ACSM3-215ENST00000614721 NESP48681 1621 aa14□□□□□ -0.17
ACSM3-215ENST00000614721 RUSC2Q8N2Y8 1516 aa13.97□□□□□ -0.17
ACSM3-215ENST00000614721 PPARGC1BQ86YN6 1023 aaKnown RBP13.97□□□□□ -0.17
ACSM3-215ENST00000614721 UBTFP17480 764 aaKnown RBP13.96□□□□□ -0.17
ACSM3-215ENST00000614721 CADPSQ9ULU8 1353 aa13.95□□□□□ -0.18
ACSM3-215ENST00000614721 TTBK1Q5TCY1 1321 aaPredicted RBP13.94□□□□□ -0.18
ACSM3-215ENST00000614721 CSRNP3Q8WYN3 585 aa13.9□□□□□ -0.18
ACSM3-215ENST00000614721 SYNJ1O43426 1573 aa13.89□□□□□ -0.19
ACSM3-215ENST00000614721 CFTRP13569 1480 aa13.89□□□□□ -0.19
ACSM3-215ENST00000614721 FANCD2Q9BXW9 1451 aa13.81□□□□□ -0.2
ACSM3-215ENST00000614721 PCGF6Q9BYE7 350 aa13.8□□□□□ -0.2
ACSM3-215ENST00000614721 CUX1P39880 1505 aa13.78□□□□□ -0.2
ACSM3-215ENST00000614721 RAD54L2Q9Y4B4 1467 aa13.71□□□□□ -0.21
ACSM3-215ENST00000614721 CUX2O14529 1486 aa13.69□□□□□ -0.22
ACSM3-215ENST00000614721 TOP2BQ02880 1626 aa13.68□□□□□ -0.22
ACSM3-215ENST00000614721 FGD5Q6ZNL6 1462 aa13.68□□□□□ -0.22
ACSM3-215ENST00000614721 CEP164Q9UPV0 1460 aa13.68□□□□□ -0.22
ACSM3-215ENST00000614721 PDS5BQ9NTI5 1447 aa13.68□□□□□ -0.22
ACSM3-215ENST00000614721 TDRD9Q8NDG6 1382 aaKnown RBP13.68□□□□□ -0.22
ACSM3-215ENST00000614721 RAPGEF2Q9Y4G8 1499 aa13.65□□□□□ -0.22
ACSM3-215ENST00000614721 ERCC6Q03468 1493 aa13.64□□□□□ -0.23
ACSM3-215ENST00000614721 KIF27Q86VH2 1401 aa13.63□□□□□ -0.23
ACSM3-215ENST00000614721 P3H3Q8IVL6 736 aa13.63□□□□□ -0.23
ACSM3-215ENST00000614721 TOPBP1Q92547 1522 aa13.61□□□□□ -0.23
ACSM3-215ENST00000614721 CEP162Q5TB80 1403 aa13.61□□□□□ -0.23
ACSM3-215ENST00000614721 URB2Q14146 1524 aaKnown RBP13.61□□□□□ -0.23
ACSM3-215ENST00000614721 EEA1Q15075 1411 aa13.6□□□□□ -0.23
ACSM3-215ENST00000614721 LAMC3Q9Y6N6 1575 aa13.59□□□□□ -0.23
ACSM3-215ENST00000614721 POLA1P09884 1462 aaPredicted RBP13.59□□□□□ -0.23
ACSM3-215ENST00000614721 GOLGA3Q08378 1498 aa13.58□□□□□ -0.23
ACSM3-215ENST00000614721 ATP1B4Q9UN42 357 aaPredicted RBP13.58□□□□□ -0.24
ACSM3-215ENST00000614721 BIVM-ERCC5R4GMW8 1640 aa13.57□□□□□ -0.24
ACSM3-215ENST00000614721 KIF21AQ7Z4S6 1674 aa13.57□□□□□ -0.24
ACSM3-215ENST00000614721 FBLN2P98095 1184 aa13.57□□□□□ -0.24
ACSM3-215ENST00000614721 IGF1RP08069 1367 aa13.55□□□□□ -0.24
ACSM3-215ENST00000614721 TNIKQ9UKE5 1360 aa13.55□□□□□ -0.24
ACSM3-215ENST00000614721 CARMIL1Q5VZK9 1371 aa13.53□□□□□ -0.24
ACSM3-215ENST00000614721 AQRO60306 1485 aaKnown RBP eCLIP13.51□□□□□ -0.25
ACSM3-215ENST00000614721 DNMBPQ6XZF7 1577 aa13.51□□□□□ -0.25
ACSM3-215ENST00000614721 CLIP1P30622 1438 aa13.5□□□□□ -0.25
ACSM3-215ENST00000614721 PRDM2Q13029 1718 aa13.5□□□□□ -0.25
ACSM3-215ENST00000614721 APLP2Q06481 763 aa13.48□□□□□ -0.25
ACSM3-215ENST00000614721 TRIM26Q12899 539 aaPredicted RBP13.47□□□□□ -0.25
ACSM3-215ENST00000614721 PRXQ9BXM0 1461 aa13.45□□□□□ -0.26
ACSM3-215ENST00000614721 MRC2Q9UBG0 1479 aa13.44□□□□□ -0.26
ACSM3-215ENST00000614721 ARID3CA6NKF2 412 aa13.44□□□□□ -0.26
ACSM3-215ENST00000614721 ZNF608Q9ULD9 1512 aaPredicted RBP13.43□□□□□ -0.26
ACSM3-215ENST00000614721 GAPVD1Q14C86 1478 aa13.41□□□□□ -0.26
ACSM3-215ENST00000614721 ABCA10Q8WWZ4 1543 aa13.4□□□□□ -0.26
ACSM3-215ENST00000614721 KIF21BO75037 1637 aa13.39□□□□□ -0.27
ACSM3-215ENST00000614721 CHMP7Q8WUX9 453 aaPredicted RBP13.36□□□□□ -0.27
ACSM3-215ENST00000614721 HNRNPUL2Q1KMD3 747 aaKnown RBP13.34□□□□□ -0.27
ACSM3-215ENST00000614721 KANK4Q5T7N3 995 aaPredicted RBP13.32□□□□□ -0.28
ACSM3-215ENST00000614721 ITGAEP38570 1179 aa13.31□□□□□ -0.28
ACSM3-215ENST00000614721 ARAP1Q96P48 1450 aa13.31□□□□□ -0.28
ACSM3-215ENST00000614721 FHOD3Q2V2M9 1422 aa13.29□□□□□ -0.28
ACSM3-215ENST00000614721 ERICH3Q5RHP9 1530 aa13.29□□□□□ -0.28
ACSM3-215ENST00000614721 VPS8Q8N3P4 1428 aa13.28□□□□□ -0.28
ACSM3-215ENST00000614721 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 262.5 ms