Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.26■■□□□ 1.31
UPK3AO75631 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
UPK3AO75631 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
UPK3AO75631 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
UPK3AO75631 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
UPK3AO75631 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
UPK3AO75631 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
UPK3AO75631 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
UPK3AO75631 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.23■■□□□ 1.31
UPK3AO75631 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
UPK3AO75631 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
UPK3AO75631 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.22■■□□□ 1.31
UPK3AO75631 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UPK3AO75631 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UPK3AO75631 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
UPK3AO75631 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
UPK3AO75631 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
UPK3AO75631 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
UPK3AO75631 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.2■■□□□ 1.3
UPK3AO75631 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
UPK3AO75631 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPK3AO75631 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UPK3AO75631 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
UPK3AO75631 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.18■■□□□ 1.3
UPK3AO75631 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.18■■□□□ 1.3
UPK3AO75631 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC23.18■■□□□ 1.3
UPK3AO75631 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
UPK3AO75631 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
UPK3AO75631 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
UPK3AO75631 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
UPK3AO75631 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC23.18■■□□□ 1.3
UPK3AO75631 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
UPK3AO75631 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
UPK3AO75631 AC142086.6-201ENST00000621154 1765 ntBASIC23.17■■□□□ 1.3
UPK3AO75631 AL139393.2-201ENST00000608721 2025 ntBASIC23.17■■□□□ 1.3
UPK3AO75631 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
UPK3AO75631 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
UPK3AO75631 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
UPK3AO75631 AC044849.2-201ENST00000606596 710 ntBASIC23.16■■□□□ 1.3
UPK3AO75631 MIR6090-201ENST00000622481 60 ntBASIC23.16■■□□□ 1.3
UPK3AO75631 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
UPK3AO75631 AC108673.1-201ENST00000510422 1159 ntBASIC23.15■■□□□ 1.3
UPK3AO75631 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.15■■□□□ 1.3
UPK3AO75631 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
UPK3AO75631 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
UPK3AO75631 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.14■■□□□ 1.3
UPK3AO75631 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
UPK3AO75631 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
UPK3AO75631 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
UPK3AO75631 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
UPK3AO75631 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC23.13■■□□□ 1.29
UPK3AO75631 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
UPK3AO75631 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
UPK3AO75631 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
UPK3AO75631 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
UPK3AO75631 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
UPK3AO75631 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
UPK3AO75631 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
UPK3AO75631 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
UPK3AO75631 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
UPK3AO75631 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.1■■□□□ 1.29
UPK3AO75631 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
UPK3AO75631 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
UPK3AO75631 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
UPK3AO75631 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
UPK3AO75631 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
UPK3AO75631 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
UPK3AO75631 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
UPK3AO75631 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC23.07■■□□□ 1.28
UPK3AO75631 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC23.06■■□□□ 1.28
UPK3AO75631 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.06■■□□□ 1.28
UPK3AO75631 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
UPK3AO75631 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
UPK3AO75631 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
UPK3AO75631 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
UPK3AO75631 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
UPK3AO75631 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.05■■□□□ 1.28
UPK3AO75631 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
UPK3AO75631 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC23.04■■□□□ 1.28
UPK3AO75631 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC23.04■■□□□ 1.28
UPK3AO75631 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.04■■□□□ 1.28
UPK3AO75631 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.04■■□□□ 1.28
UPK3AO75631 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
UPK3AO75631 AC127502.1-201ENST00000399971 1502 ntBASIC23.03■■□□□ 1.28
UPK3AO75631 DRD5P2-201ENST00000421395 2012 ntBASIC23.03■■□□□ 1.28
UPK3AO75631 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.02■■□□□ 1.28
UPK3AO75631 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.02■■□□□ 1.28
UPK3AO75631 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
UPK3AO75631 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
UPK3AO75631 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23■■□□□ 1.27
UPK3AO75631 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC23■■□□□ 1.27
UPK3AO75631 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
UPK3AO75631 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
UPK3AO75631 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
UPK3AO75631 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
UPK3AO75631 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
UPK3AO75631 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
UPK3AO75631 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
UPK3AO75631 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC22.98■■□□□ 1.27
UPK3AO75631 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms