Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 CR392000.1-201ENST00000624770 1228 ntBASIC24.62■■□□□ 1.53
CCDC88AQ3V6T2 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 CLN6-221ENST00000637494 765 ntTSL 5 BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC88AQ3V6T2 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC88AQ3V6T2 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC24.6■■□□□ 1.53
CCDC88AQ3V6T2 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC88AQ3V6T2 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
CCDC88AQ3V6T2 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC88AQ3V6T2 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC88AQ3V6T2 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC24.6■■□□□ 1.53
CCDC88AQ3V6T2 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC24.6■■□□□ 1.53
CCDC88AQ3V6T2 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC24.6■■□□□ 1.53
CCDC88AQ3V6T2 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC24.6■■□□□ 1.53
CCDC88AQ3V6T2 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CCDC88AQ3V6T2 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 KRT18P56-201ENST00000507275 550 ntBASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC88AQ3V6T2 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
CCDC88AQ3V6T2 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC24.58■■□□□ 1.53
CCDC88AQ3V6T2 KRT18P48-201ENST00000434763 852 ntBASIC24.58■■□□□ 1.53
CCDC88AQ3V6T2 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC24.58■■□□□ 1.53
CCDC88AQ3V6T2 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC88AQ3V6T2 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC88AQ3V6T2 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC24.58■■□□□ 1.52
CCDC88AQ3V6T2 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
CCDC88AQ3V6T2 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
CCDC88AQ3V6T2 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.52
CCDC88AQ3V6T2 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
CCDC88AQ3V6T2 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
CCDC88AQ3V6T2 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC24.58■■□□□ 1.52
CCDC88AQ3V6T2 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC24.58■■□□□ 1.52
CCDC88AQ3V6T2 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC88AQ3V6T2 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC88AQ3V6T2 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC88AQ3V6T2 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC88AQ3V6T2 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC24.57■■□□□ 1.52
CCDC88AQ3V6T2 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
CCDC88AQ3V6T2 GUK1-204ENST00000366721 689 ntTSL 3 BASIC24.57■■□□□ 1.52
CCDC88AQ3V6T2 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC88AQ3V6T2 FEM1AP4-201ENST00000443167 1987 ntBASIC24.57■■□□□ 1.52
CCDC88AQ3V6T2 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 AL031133.1-201ENST00000406807 723 ntBASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 COPS8-203ENST00000409334 794 ntTSL 5 BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC88AQ3V6T2 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 PRR31-201ENST00000371629 978 ntTSL 2 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 AL031985.4-201ENST00000642138 673 ntBASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
CCDC88AQ3V6T2 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms