Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 AL031963.3-201ENST00000606441 850 ntBASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATG4BQ9Y4P1 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 KRT8P20-201ENST00000423953 1409 ntBASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 AC073210.2-201ENST00000430369 194 ntBASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 AC069152.1-201ENST00000438030 544 ntBASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 AC097658.1-201ENST00000475555 843 ntBASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 TCF3P1-201ENST00000423021 1937 ntBASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.95■□□□□ 0.62
ATG4BQ9Y4P1 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 AC023632.3-201ENST00000521633 145 ntBASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 AC133041.1-202ENST00000642053 222 ntBASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
ATG4BQ9Y4P1 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 AL691432.2-201ENST00000607222 2038 ntBASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 AC083880.1-201ENST00000608266 535 ntBASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.93■□□□□ 0.62
ATG4BQ9Y4P1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms