Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSU72Q9NP77 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSU72Q9NP77 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSU72Q9NP77 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
SSU72Q9NP77 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
SSU72Q9NP77 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SSU72Q9NP77 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.87■□□□□ 0.77
SSU72Q9NP77 AC097381.1-201ENST00000429019 1296 ntBASIC19.87■□□□□ 0.77
SSU72Q9NP77 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.87■□□□□ 0.77
SSU72Q9NP77 AF213884.3-201ENST00000563833 479 ntBASIC19.87■□□□□ 0.77
SSU72Q9NP77 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.87■□□□□ 0.77
SSU72Q9NP77 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.87■□□□□ 0.77
SSU72Q9NP77 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.87■□□□□ 0.77
SSU72Q9NP77 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.87■□□□□ 0.77
SSU72Q9NP77 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSU72Q9NP77 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.86■□□□□ 0.77
SSU72Q9NP77 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SSU72Q9NP77 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SSU72Q9NP77 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSU72Q9NP77 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSU72Q9NP77 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSU72Q9NP77 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.86■□□□□ 0.77
SSU72Q9NP77 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SSU72Q9NP77 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSU72Q9NP77 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSU72Q9NP77 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SSU72Q9NP77 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SSU72Q9NP77 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.86■□□□□ 0.77
SSU72Q9NP77 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.86■□□□□ 0.77
SSU72Q9NP77 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.86■□□□□ 0.77
SSU72Q9NP77 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.86■□□□□ 0.77
SSU72Q9NP77 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.86■□□□□ 0.77
SSU72Q9NP77 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SSU72Q9NP77 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSU72Q9NP77 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSU72Q9NP77 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SSU72Q9NP77 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.85■□□□□ 0.77
SSU72Q9NP77 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.85■□□□□ 0.77
SSU72Q9NP77 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.85■□□□□ 0.77
SSU72Q9NP77 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.85■□□□□ 0.77
SSU72Q9NP77 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.85■□□□□ 0.77
SSU72Q9NP77 AC104187.1-201ENST00000607510 612 ntBASIC19.85■□□□□ 0.77
SSU72Q9NP77 AL356652.1-201ENST00000615962 565 ntBASIC19.85■□□□□ 0.77
SSU72Q9NP77 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.85■□□□□ 0.77
SSU72Q9NP77 AL136967.2-201ENST00000623968 743 ntBASIC19.85■□□□□ 0.77
SSU72Q9NP77 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.85■□□□□ 0.77
SSU72Q9NP77 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.85■□□□□ 0.77
SSU72Q9NP77 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SSU72Q9NP77 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SSU72Q9NP77 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.85■□□□□ 0.77
SSU72Q9NP77 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SSU72Q9NP77 AC087633.2-202ENST00000565166 1439 ntBASIC19.85■□□□□ 0.77
SSU72Q9NP77 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 CDV3P1-201ENST00000471403 739 ntBASIC19.84■□□□□ 0.77
SSU72Q9NP77 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.84■□□□□ 0.77
SSU72Q9NP77 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSU72Q9NP77 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms