Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 HNRNPA1P28-201ENST00000424481 961 ntBASIC11.07□□□□□ -0.64
UBR4Q5T4S7 SLC25A6P5-201ENST00000435663 894 ntBASIC11.07□□□□□ -0.64
UBR4Q5T4S7 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 PMS2P7-201ENST00000506558 1336 ntBASIC11.07□□□□□ -0.64
UBR4Q5T4S7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
UBR4Q5T4S7 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 AL035252.4-201ENST00000624174 288 ntBASIC11.06□□□□□ -0.64
UBR4Q5T4S7 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 AC097488.1-201ENST00000507834 756 ntBASIC11.06□□□□□ -0.64
UBR4Q5T4S7 CCDC74BP1-201ENST00000508880 1123 ntBASIC11.06□□□□□ -0.64
UBR4Q5T4S7 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 LINC00526-201ENST00000581067 1875 ntBASIC11.06□□□□□ -0.64
UBR4Q5T4S7 SNX12-206ENST00000622259 661 ntTSL 5 BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
UBR4Q5T4S7 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 AC008040.2-201ENST00000461049 708 ntBASIC11.05□□□□□ -0.64
UBR4Q5T4S7 AP002414.4-201ENST00000589764 1148 ntBASIC11.05□□□□□ -0.64
UBR4Q5T4S7 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 AC106730.1-201ENST00000566722 1090 ntBASIC11.05□□□□□ -0.64
UBR4Q5T4S7 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 AC140113.3-201ENST00000605663 199 ntBASIC11.05□□□□□ -0.64
UBR4Q5T4S7 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 HES2-202ENST00000377836 507 ntTSL 2 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 AC098831.1-202ENST00000438821 336 ntBASIC11.05□□□□□ -0.64
UBR4Q5T4S7 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC11.05□□□□□ -0.64
UBR4Q5T4S7 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC11.04□□□□□ -0.64
UBR4Q5T4S7 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC11.04□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms