Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 KRT18P22-201ENST00000402024 1347 ntBASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 NAPSB-206ENST00000562112 1266 ntBASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 AP000525.1-201ENST00000608286 694 ntBASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHGA1Q9Y5H4 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 MIR1238-201ENST00000408483 83 ntBASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 AC233723.2-201ENST00000623798 2106 ntBASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 AL117328.2-201ENST00000624617 1940 ntBASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PCDHGA1Q9Y5H4 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 KRT8P9-201ENST00000558927 1449 ntBASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 AC011484.1-201ENST00000377652 1995 ntBASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 AC116562.2-201ENST00000507042 360 ntBASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 FITM1-202ENST00000559294 800 ntBASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
PCDHGA1Q9Y5H4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 KSR1P1-201ENST00000446298 240 ntBASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 AC124283.5-201ENST00000624661 1809 ntBASIC19.35■□□□□ 0.69
PCDHGA1Q9Y5H4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 AL137013.1-201ENST00000432946 1228 ntBASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PCDHGA1Q9Y5H4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms