Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.421e-9■■■■□ 24.2
UPF1Q92900 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.353e-6■■■■□ 24.2
UPF1Q92900 MAPKAP1-212ENST00000437973 769 ntTSL 216.03■□□□□ 0.163e-6■■■■□ 24.2
UPF1Q92900 MAPKAP1-209ENST00000420643 984 ntTSL 515.13■□□□□ 0.013e-6■■■■□ 24.2
UPF1Q92900 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.023e-6■■■■□ 24.2
UPF1Q92900 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.13e-6■■■■□ 24.2
UPF1Q92900 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.233e-6■■■■□ 24.2
UPF1Q92900 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.253e-6■■■■□ 24.2
UPF1Q92900 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC13.45□□□□□ -0.263e-6■■■■□ 24.2
UPF1Q92900 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC13.38□□□□□ -0.273e-6■■■■□ 24.2
UPF1Q92900 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.3□□□□□ -0.283e-6■■■■□ 24.2
UPF1Q92900 ZPR1-206ENST00000444935 2497 ntTSL 512.81□□□□□ -0.363e-6■■■■□ 24.2
UPF1Q92900 EMC1-203ENST00000461353 2175 ntTSL 212.77□□□□□ -0.362e-11■■■■□ 24.2
UPF1Q92900 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.423e-6■■■■□ 24.2
UPF1Q92900 ZC3H3-201ENST00000262577 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.443e-6■■■■□ 24.2
UPF1Q92900 CALML4-204ENST00000448060 2520 ntTSL 2 BASIC12.2□□□□□ -0.463e-6■■■■□ 24.2
UPF1Q92900 ZKSCAN5-202ENST00000394170 4344 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.463e-6■■■■□ 24.2
UPF1Q92900 AMPD2-204ENST00000369840 3130 ntAPPRIS ALT2 TSL 511.71□□□□□ -0.542e-6■■■■□ 24.2
UPF1Q92900 BAHCC1-206ENST00000584436 10801 ntAPPRIS P2 TSL 5 BASIC11.32□□□□□ -0.63e-6■■■■□ 24.2
UPF1Q92900 CALML4-205ENST00000467188 620 ntTSL 211.21□□□□□ -0.613e-6■■■■□ 24.2
UPF1Q92900 PHTF2-203ENST00000307305 4793 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.633e-6■■■■□ 24.2
UPF1Q92900 MBLAC2-201ENST00000316610 4280 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.653e-6■■■■□ 24.2
UPF1Q92900 ZNF8-201ENST00000621650 9128 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.673e-6■■■■□ 24.2
UPF1Q92900 ZPR1-201ENST00000227322 6566 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.673e-6■■■■□ 24.2
UPF1Q92900 ZKSCAN5-204ENST00000454175 5626 ntTSL 1 (best)10.69□□□□□ -0.73e-6■■■■□ 24.2
UPF1Q92900 RNMT-205ENST00000588457 1612 ntTSL 210.66□□□□□ -0.72e-11■■■■□ 24.2
UPF1Q92900 ABI2-223ENST00000464761 596 ntTSL 59.95□□□□□ -0.823e-6■■■■□ 24.2
UPF1Q92900 PHTF2-209ENST00000454592 1563 ntTSL 1 (best)9.82□□□□□ -0.843e-6■■■■□ 24.2
UPF1Q92900 UBE3C-205ENST00000470408 5197 ntTSL 29.79□□□□□ -0.843e-6■■■■□ 24.2
UPF1Q92900 PHTF2-205ENST00000416283 5198 ntTSL 5 BASIC9.58□□□□□ -0.883e-6■■■■□ 24.2
UPF1Q92900 LARS-202ENST00000394434 4766 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.92e-7■■■■□ 24.2
UPF1Q92900 RNMT-210ENST00000593007 811 ntTSL 49.44□□□□□ -0.92e-11■■■■□ 24.2
UPF1Q92900 CALML4-208ENST00000540479 4603 ntTSL 1 (best) BASIC8.97□□□□□ -0.973e-6■■■■□ 24.2
UPF1Q92900 ZKSCAN5-201ENST00000326775 4178 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.983e-6■■■■□ 24.2
UPF1Q92900 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC8.75□□□□□ -1.013e-6■■■■□ 24.2
UPF1Q92900 CALML4-203ENST00000395465 4155 ntTSL 1 (best) BASIC8.58□□□□□ -1.043e-6■■■■□ 24.2
UPF1Q92900 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.13e-6■■■■□ 24.2
UPF1Q92900 PHTF2-212ENST00000479515 2467 ntTSL 58.11□□□□□ -1.113e-6■■■■□ 24.2
UPF1Q92900 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.33e-6■■■■□ 24.2
UPF1Q92900 CALML4-207ENST00000478113 3651 ntTSL 1 (best)6.63□□□□□ -1.353e-6■■■■□ 24.2
UPF1Q92900 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.56□□□□□ -1.523e-6■■■■□ 24.2
UPF1Q92900 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC5.55□□□□□ -1.523e-6■■■■□ 24.2
UPF1Q92900 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.71□□□□□ -1.663e-6■■■■□ 24.2
UPF1Q92900 TSPAN14-201ENST00000265450 2588 ntTSL 218.92■□□□□ 0.623e-9■■■■□ 24.2
UPF1Q92900 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.47e-10■■■■□ 24.2
UPF1Q92900 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.334e-7■■■■□ 24.2
UPF1Q92900 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.164e-7■■■■□ 24.2
UPF1Q92900 DAPK3-205ENST00000595279 2058 ntTSL 223.61■■□□□ 1.374e-10■■■■□ 24.2
UPF1Q92900 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.354e-10■■■■□ 24.2
UPF1Q92900 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.264e-10■■■■□ 24.2
UPF1Q92900 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC18.43■□□□□ 0.542e-9■■■■□ 24.2
UPF1Q92900 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.25e-10■■■■□ 24.2
UPF1Q92900 ARFGAP2-201ENST00000395449 1772 ntTSL 516.5■□□□□ 0.235e-9■■■■□ 24.2
UPF1Q92900 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.24e-7■■■■□ 24.1
UPF1Q92900 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC21.55■■□□□ 1.044e-8■■■■□ 24.1
UPF1Q92900 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.269e-7■■■■□ 24.1
UPF1Q92900 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.179e-7■■■■□ 24.1
UPF1Q92900 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.29e-7■■■■□ 24.1
UPF1Q92900 ILF3-219ENST00000590261 3219 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.064e-12■■■■□ 24.1
UPF1Q92900 ILF3-221ENST00000591649 2579 ntTSL 213.33□□□□□ -0.284e-12■■■■□ 24.1
UPF1Q92900 ILF3-208ENST00000587928 4230 ntTSL 211.36□□□□□ -0.594e-12■■■■□ 24.1
UPF1Q92900 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC16.07■□□□□ 0.162e-13■■■■□ 24.1
UPF1Q92900 TRIM65-205ENST00000591668 644 ntTSL 217.06■□□□□ 0.323e-8■■■■□ 24.1
UPF1Q92900 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.063e-8■■■■□ 24.1
UPF1Q92900 TRIM65-206ENST00000592642 396 ntTSL 312.54□□□□□ -0.43e-8■■■■□ 24.1
UPF1Q92900 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC22.08■■□□□ 1.138e-7■■■■□ 24.1
UPF1Q92900 PRPF31-207ENST00000466404 1837 ntTSL 219.6■□□□□ 0.738e-7■■■■□ 24.1
UPF1Q92900 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.538e-7■■■■□ 24.1
UPF1Q92900 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.39■□□□□ 0.378e-7■■■■□ 24.1
UPF1Q92900 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.011e-7■■■■□ 24.1
UPF1Q92900 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC22.55■■□□□ 1.24e-7■■■■□ 24.1
UPF1Q92900 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.144e-7■■■■□ 24.1
UPF1Q92900 PMPCA-204ENST00000444897 2316 ntTSL 215.78■□□□□ 0.124e-7■■■■□ 24.1
UPF1Q92900 RNF166-209ENST00000567844 633 ntTSL 5 BASIC37.11■■■■□ 3.531e-6■■■■□ 24.1
UPF1Q92900 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC26.68■■□□□ 1.861e-6■■■■□ 24.1
UPF1Q92900 C11orf49-215ENST00000528488 1623 ntTSL 225.93■■□□□ 1.741e-6■■■■□ 24.1
UPF1Q92900 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.661e-6■■■■□ 24.1
UPF1Q92900 RNF166-207ENST00000565083 588 ntTSL 325.03■■□□□ 1.61e-9■■■■□ 24.1
UPF1Q92900 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC23.35■■□□□ 1.331e-6■■■■□ 24.1
UPF1Q92900 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.291e-6■■■■□ 24.1
UPF1Q92900 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.241e-6■■■■□ 24.1
UPF1Q92900 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.43■■□□□ 1.182e-6■■■■□ 24.1
UPF1Q92900 LMAN2L-207ENST00000449221 1061 ntTSL 222.09■■□□□ 1.131e-6■■■■□ 24.1
UPF1Q92900 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.092e-6■■■■□ 24.1
UPF1Q92900 ATP2A2-203ENST00000377685 5702 ntTSL 521.44■■□□□ 1.021e-6■■■■□ 24.1
UPF1Q92900 C11orf49-207ENST00000525895 1527 ntTSL 220.56■□□□□ 0.881e-6■■■■□ 24.1
UPF1Q92900 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC20.19■□□□□ 0.821e-6■■■■□ 24.1
UPF1Q92900 C11orf49-214ENST00000527784 1069 ntTSL 218.85■□□□□ 0.611e-6■■■■□ 24.1
UPF1Q92900 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.491e-6■■■■□ 24.1
UPF1Q92900 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.464e-7■■■■□ 24.1
UPF1Q92900 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.66■□□□□ 0.421e-6■■■■□ 24.1
UPF1Q92900 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.211e-6■■■■□ 24.1
UPF1Q92900 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.23■□□□□ 0.191e-6■■■■□ 24.1
UPF1Q92900 PFAS-202ENST00000546020 2652 ntTSL 215.64■□□□□ 0.091e-6■■■■□ 24.1
UPF1Q92900 NIP7-201ENST00000254940 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.062e-6■■■■□ 24.1
UPF1Q92900 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.38■□□□□ 0.052e-7■■■■□ 24.1
UPF1Q92900 NDUFA10-206ENST00000419408 662 ntTSL 514.48□□□□□ -0.091e-6■■■■□ 24.1
UPF1Q92900 NDUFA10-211ENST00000476216 817 ntTSL 214.13□□□□□ -0.151e-6■■■■□ 24.1
UPF1Q92900 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.155e-7■■■■□ 24.1
UPF1Q92900 C11orf49-223ENST00000624693 2141 nt14.09□□□□□ -0.151e-6■■■■□ 24.1
Retrieved 100 of 15,879 protein–RNA pairs in 253.7 ms