RNA–Protein interactions for RNA: ENST00000415691.2

HNF4A-204, Transcript of hepatocyte nuclear factor 4 alpha, humanhuman

TSL 1 (best) BASIC

Gene HNF4A, Length 2,302 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4A-204ENST00000415691 NISCHQ9Y2I1 1504 aa29.64■■■□□ 2.33
HNF4A-204ENST00000415691 CCDC180Q9P1Z9 1646 aa25.94■■□□□ 1.74
HNF4A-204ENST00000415691 ABCC9O60706 1549 aa25.09■■□□□ 1.61
HNF4A-204ENST00000415691 ZCCHC6Q5VYS8 1495 aaKnown RBP24.78■■□□□ 1.56
HNF4A-204ENST00000415691 DCAF8L2P0C7V8 631 aa24.77■■□□□ 1.56
HNF4A-204ENST00000415691 DCAF1Q9Y4B6 1507 aa24.44■■□□□ 1.5
HNF4A-204ENST00000415691 NACADO15069 1562 aa24.32■■□□□ 1.48
HNF4A-204ENST00000415691 MYO15BQ96JP2 1530 aa24.3■■□□□ 1.48
HNF4A-204ENST00000415691 RB1CC1Q8TDY2 1594 aa24.22■■□□□ 1.47
HNF4A-204ENST00000415691 SHROOM4Q9ULL8 1493 aa23.98■■□□□ 1.43
HNF4A-204ENST00000415691 SCRIBQ14160 1630 aa23.9■■□□□ 1.42
HNF4A-204ENST00000415691 UNC13AQ9UPW8 1703 aa23.7■■□□□ 1.38
HNF4A-204ENST00000415691 PABPN1Q86U42 306 aaKnown RBP eCLIP23.65■■□□□ 1.386e-6■■□□□ 12.8
HNF4A-204ENST00000415691 BICRAQ9NZM4 1560 aa23.55■■□□□ 1.36
HNF4A-204ENST00000415691 CECR2Q9BXF3 1484 aa23.13■■□□□ 1.29
HNF4A-204ENST00000415691 MROH2BQ7Z745 1585 aa22.91■■□□□ 1.26
HNF4A-204ENST00000415691 BAZ1AQ9NRL2 1556 aaPredicted RBP22.88■■□□□ 1.25
HNF4A-204ENST00000415691 SUPT5HO00267 1087 aaKnown RBP22.86■■□□□ 1.25
HNF4A-204ENST00000415691 RSF1Q96T23 1441 aaPredicted RBP22.86■■□□□ 1.25
HNF4A-204ENST00000415691 EIF4G1Q04637 1599 aaKnown RBP22.86■■□□□ 1.25
HNF4A-204ENST00000415691 SMARCA4P51532 1647 aa22.85■■□□□ 1.25
HNF4A-204ENST00000415691 WIZO95785 1651 aa22.68■■□□□ 1.22
HNF4A-204ENST00000415691 DNAJC5BQ9UF47 199 aa22.64■■□□□ 1.22
HNF4A-204ENST00000415691 CC2D2AQ9P2K1 1620 aa22.64■■□□□ 1.22
HNF4A-204ENST00000415691 ATAD2BQ9ULI0 1458 aa22.63■■□□□ 1.21
HNF4A-204ENST00000415691 PEG3Q9GZU2 1588 aa22.56■■□□□ 1.2
HNF4A-204ENST00000415691 SMARCA2P51531 1590 aa22.54■■□□□ 1.2
HNF4A-204ENST00000415691 NCAPD3P42695 1498 aa22.5■■□□□ 1.19
HNF4A-204ENST00000415691 BAZ1BQ9UIG0 1483 aaKnown RBP22.45■■□□□ 1.19
HNF4A-204ENST00000415691 TOP2AP11388 1531 aaKnown RBP22.39■■□□□ 1.17
HNF4A-204ENST00000415691 HMGXB3Q12766 1538 aa22.37■■□□□ 1.17
HNF4A-204ENST00000415691 CCDC88BA6NC98 1476 aa22.23■■□□□ 1.15
HNF4A-204ENST00000415691 HRCP23327 699 aa21.97■■□□□ 1.11
HNF4A-204ENST00000415691 CADPSQ9ULU8 1353 aa21.92■■□□□ 1.1
HNF4A-204ENST00000415691 NESP48681 1621 aa21.9■■□□□ 1.1
HNF4A-204ENST00000415691 CFTRP13569 1480 aa21.87■■□□□ 1.09
HNF4A-204ENST00000415691 LAMC3Q9Y6N6 1575 aa21.75■■□□□ 1.07
HNF4A-204ENST00000415691 FANCD2Q9BXW9 1451 aa21.65■■□□□ 1.06
HNF4A-204ENST00000415691 PDS5BQ9NTI5 1447 aa21.64■■□□□ 1.06
HNF4A-204ENST00000415691 CHIC1Q5VXU3 224 aa21.63■■□□□ 1.05
HNF4A-204ENST00000415691 ABCC8Q09428 1581 aa21.61■■□□□ 1.05
HNF4A-204ENST00000415691 PRDM2Q13029 1718 aa21.6■■□□□ 1.05
HNF4A-204ENST00000415691 PELP1Q8IZL8 1130 aaKnown RBP21.6■■□□□ 1.05
HNF4A-204ENST00000415691 KIF21AQ7Z4S6 1674 aa21.54■■□□□ 1.04
HNF4A-204ENST00000415691 CEP164Q9UPV0 1460 aa21.54■■□□□ 1.04
HNF4A-204ENST00000415691 ERCC6Q03468 1493 aa21.52■■□□□ 1.04
HNF4A-204ENST00000415691 WRNQ14191 1432 aaPredicted RBP eCLIP21.51■■□□□ 1.03
HNF4A-204ENST00000415691 TRIM41Q8WV44 630 aa21.49■■□□□ 1.03
HNF4A-204ENST00000415691 CUX1P39880 1505 aa21.43■■□□□ 1.02
HNF4A-204ENST00000415691 SYNJ1O43426 1573 aa21.42■■□□□ 1.02
HNF4A-204ENST00000415691 URB2Q14146 1524 aaKnown RBP21.42■■□□□ 1.02
HNF4A-204ENST00000415691 MRC2Q9UBG0 1479 aa21.38■■□□□ 1.01
HNF4A-204ENST00000415691 TOPBP1Q92547 1522 aa21.36■■□□□ 1.01
HNF4A-204ENST00000415691 TOP2BQ02880 1626 aa21.34■■□□□ 1.01
HNF4A-204ENST00000415691 DNMBPQ6XZF7 1577 aa21.33■■□□□ 1.01
HNF4A-204ENST00000415691 THOC2Q8NI27 1593 aaKnown RBP21.3■■□□□ 1
HNF4A-204ENST00000415691 BIVM-ERCC5R4GMW8 1640 aa21.3■■□□□ 1
HNF4A-204ENST00000415691 WDR62O43379 1518 aa21.27■■□□□ 1
HNF4A-204ENST00000415691 FGD5Q6ZNL6 1462 aa21.27■□□□□ 0.99
HNF4A-204ENST00000415691 PCGF6Q9BYE7 350 aa21.23■□□□□ 0.99
HNF4A-204ENST00000415691 POLA1P09884 1462 aaPredicted RBP21.23■□□□□ 0.99
HNF4A-204ENST00000415691 RAD54L2Q9Y4B4 1467 aa21.21■□□□□ 0.99
HNF4A-204ENST00000415691 SOGA1O94964 1423 aa21.19■□□□□ 0.98
HNF4A-204ENST00000415691 PPARGC1BQ86YN6 1023 aaKnown RBP21.17■□□□□ 0.98
HNF4A-204ENST00000415691 CUX2O14529 1486 aa21.17■□□□□ 0.98
HNF4A-204ENST00000415691 FAM9AQ8IZU1 332 aaPredicted RBP21.15■□□□□ 0.98
HNF4A-204ENST00000415691 RUSC2Q8N2Y8 1516 aa21.12■□□□□ 0.97
HNF4A-204ENST00000415691 TDRD9Q8NDG6 1382 aaKnown RBP21.06■□□□□ 0.96
HNF4A-204ENST00000415691 TARBP1Q13395 1621 aaKnown RBP21.06■□□□□ 0.96
HNF4A-204ENST00000415691 IFT140Q96RY7 1462 aa21.05■□□□□ 0.96
HNF4A-204ENST00000415691 ABCA10Q8WWZ4 1543 aa21.04■□□□□ 0.96
HNF4A-204ENST00000415691 ZNF608Q9ULD9 1512 aaPredicted RBP21.02■□□□□ 0.96
HNF4A-204ENST00000415691 AQRO60306 1485 aaKnown RBP eCLIP20.99■□□□□ 0.952e-7■■■■□ 26.1
HNF4A-204ENST00000415691 KIF27Q86VH2 1401 aa20.99■□□□□ 0.95
HNF4A-204ENST00000415691 WDR97A6NE52 1622 aa20.97■□□□□ 0.95
HNF4A-204ENST00000415691 CSRNP3Q8WYN3 585 aa20.95■□□□□ 0.94
HNF4A-204ENST00000415691 GAPVD1Q14C86 1478 aa20.92■□□□□ 0.94
HNF4A-204ENST00000415691 IGF1RP08069 1367 aa20.91■□□□□ 0.94
HNF4A-204ENST00000415691 EHMT2Q96KQ7 1210 aa20.91■□□□□ 0.94
HNF4A-204ENST00000415691 MYT1Q01538 1121 aa20.9■□□□□ 0.94
HNF4A-204ENST00000415691 EEA1Q15075 1411 aa20.9■□□□□ 0.94
HNF4A-204ENST00000415691 ABCA5Q8WWZ7 1642 aa20.88■□□□□ 0.93
HNF4A-204ENST00000415691 EIF4G3O43432 1585 aaKnown RBP20.85■□□□□ 0.93
HNF4A-204ENST00000415691 LOC105371045A0A1W2PR82 267 aa20.85■□□□□ 0.93
HNF4A-204ENST00000415691 GRIN2BQ13224 1484 aa20.81■□□□□ 0.92
HNF4A-204ENST00000415691 ZEB1P37275 1124 aaPredicted RBP20.79■□□□□ 0.92
HNF4A-204ENST00000415691 CARMIL1Q5VZK9 1371 aa20.78■□□□□ 0.92
HNF4A-204ENST00000415691 ERICH3Q5RHP9 1530 aa20.77■□□□□ 0.92
HNF4A-204ENST00000415691 TRIM26Q12899 539 aaPredicted RBP20.77■□□□□ 0.92
HNF4A-204ENST00000415691 PBRM1Q86U86 1689 aa20.76■□□□□ 0.91
HNF4A-204ENST00000415691 PRXQ9BXM0 1461 aa20.74■□□□□ 0.91
HNF4A-204ENST00000415691 SNAPC4Q5SXM2 1469 aa20.74■□□□□ 0.91
HNF4A-204ENST00000415691 RAPGEF2Q9Y4G8 1499 aa20.71■□□□□ 0.91
HNF4A-204ENST00000415691 SCAF1Q9H7N4 1312 aaKnown RBP20.71■□□□□ 0.91
HNF4A-204ENST00000415691 FBLN2P98095 1184 aa20.69■□□□□ 0.9
HNF4A-204ENST00000415691 FHAD1B1AJZ9 1412 aa20.67■□□□□ 0.9
HNF4A-204ENST00000415691 UBTFP17480 764 aaKnown RBP20.66■□□□□ 0.9
HNF4A-204ENST00000415691 CUL7Q14999 1698 aa20.65■□□□□ 0.9
HNF4A-204ENST00000415691 MAGI1Q96QZ7 1491 aaPredicted RBP20.65■□□□□ 0.9
HNF4A-204ENST00000415691 CHMP7Q8WUX9 453 aaPredicted RBP20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms