Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13CQ709C8 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13CQ709C8 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13CQ709C8 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS13CQ709C8 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13CQ709C8 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13CQ709C8 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.89■□□□□ 0.29
VPS13CQ709C8 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
VPS13CQ709C8 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
VPS13CQ709C8 KRT18P56-201ENST00000507275 550 ntBASIC16.89■□□□□ 0.29
VPS13CQ709C8 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.89■□□□□ 0.29
VPS13CQ709C8 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS13CQ709C8 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS13CQ709C8 AL356652.1-201ENST00000615962 565 ntBASIC16.89■□□□□ 0.29
VPS13CQ709C8 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS13CQ709C8 AL121603.2-201ENST00000557373 2117 ntBASIC16.89■□□□□ 0.29
VPS13CQ709C8 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS13CQ709C8 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS13CQ709C8 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13CQ709C8 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13CQ709C8 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13CQ709C8 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13CQ709C8 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS13CQ709C8 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS13CQ709C8 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13CQ709C8 ECEL1P2-202ENST00000465689 757 ntBASIC16.88■□□□□ 0.29
VPS13CQ709C8 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.88■□□□□ 0.29
VPS13CQ709C8 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13CQ709C8 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS13CQ709C8 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13CQ709C8 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13CQ709C8 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13CQ709C8 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS13CQ709C8 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13CQ709C8 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13CQ709C8 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS13CQ709C8 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VPS13CQ709C8 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS13CQ709C8 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS13CQ709C8 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS13CQ709C8 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13CQ709C8 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13CQ709C8 STK25-234ENST00000535007 2459 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS13CQ709C8 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13CQ709C8 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13CQ709C8 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13CQ709C8 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13CQ709C8 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.87■□□□□ 0.29
VPS13CQ709C8 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS13CQ709C8 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13CQ709C8 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS13CQ709C8 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS13CQ709C8 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS13CQ709C8 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS13CQ709C8 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13CQ709C8 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS13CQ709C8 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VPS13CQ709C8 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
VPS13CQ709C8 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS13CQ709C8 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13CQ709C8 AC073195.1-201ENST00000607241 877 ntBASIC16.86■□□□□ 0.29
VPS13CQ709C8 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS13CQ709C8 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13CQ709C8 AC133561.1-201ENST00000568600 2415 ntBASIC16.86■□□□□ 0.29
VPS13CQ709C8 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13CQ709C8 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13CQ709C8 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13CQ709C8 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS13CQ709C8 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13CQ709C8 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS13CQ709C8 WWOX-216ENST00000569818 525 ntBASIC16.86■□□□□ 0.29
VPS13CQ709C8 AC004264.1-201ENST00000608354 794 ntBASIC16.86■□□□□ 0.29
VPS13CQ709C8 KRT16P1-201ENST00000399124 1418 ntBASIC16.86■□□□□ 0.29
VPS13CQ709C8 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13CQ709C8 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13CQ709C8 MIR1238-201ENST00000408483 83 ntBASIC16.86■□□□□ 0.29
VPS13CQ709C8 DUSP5P1-201ENST00000441325 1139 ntBASIC16.86■□□□□ 0.29
VPS13CQ709C8 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS13CQ709C8 FITM1-202ENST00000559294 800 ntBASIC16.86■□□□□ 0.29
VPS13CQ709C8 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS13CQ709C8 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13CQ709C8 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS13CQ709C8 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS13CQ709C8 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS13CQ709C8 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS13CQ709C8 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13CQ709C8 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13CQ709C8 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13CQ709C8 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
VPS13CQ709C8 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13CQ709C8 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS13CQ709C8 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13CQ709C8 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS13CQ709C8 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS13CQ709C8 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS13CQ709C8 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 KRT8P36-201ENST00000489121 1440 ntBASIC16.84■□□□□ 0.29
VPS13CQ709C8 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
VPS13CQ709C8 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS13CQ709C8 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms