Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 HBE1-203ENST00000396895 578 ntTSL 55.88□□□□□ -1.474e-9■■■■□ 26.6
LIN28BQ6ZN17 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.58□□□□□ -0.071e-6■■■■□ 26.6
LIN28BQ6ZN17 DLG1-201ENST00000346964 5034 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.761e-6■■■■□ 26.6
LIN28BQ6ZN17 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC8.23□□□□□ -1.091e-6■■■■□ 26.6
LIN28BQ6ZN17 DLG1-208ENST00000419354 3994 ntAPPRIS ALT1 TSL 1 (best) BASIC8.14□□□□□ -1.111e-6■■■■□ 26.6
LIN28BQ6ZN17 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.752e-8■■■■□ 26.6
LIN28BQ6ZN17 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.422e-8■■■■□ 26.6
LIN28BQ6ZN17 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.342e-8■■■■□ 26.6
LIN28BQ6ZN17 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.09■□□□□ 0.332e-8■■■■□ 26.6
LIN28BQ6ZN17 PAM-210ENST00000504691 1417 ntTSL 1 (best)5.87□□□□□ -1.474e-7■■■■□ 26.5
LIN28BQ6ZN17 PAM-209ENST00000504456 923 ntTSL 34.47□□□□□ -1.694e-7■■■■□ 26.5
LIN28BQ6ZN17 PAM-220ENST00000510006 810 ntTSL 34.22□□□□□ -1.734e-7■■■■□ 26.5
LIN28BQ6ZN17 DYNC1H1-208ENST00000556139 763 ntTSL 317.38■□□□□ 0.371e-6■■■■□ 26.5
LIN28BQ6ZN17 MPP1-206ENST00000417435 970 ntTSL 519.91■□□□□ 0.786e-15■■■■□ 26.5
LIN28BQ6ZN17 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.488e-7■■■■□ 26.5
LIN28BQ6ZN17 AC118553.2-204ENST00000639040 2568 ntTSL 517.99■□□□□ 0.478e-7■■■■□ 26.5
LIN28BQ6ZN17 AC118553.2-201ENST00000638968 3175 ntTSL 515.49■□□□□ 0.078e-7■■■■□ 26.5
LIN28BQ6ZN17 AC118553.2-208ENST00000640357 3488 ntTSL 513.34□□□□□ -0.278e-7■■■■□ 26.5
LIN28BQ6ZN17 AC118553.2-206ENST00000639171 5352 ntTSL 511.07□□□□□ -0.648e-7■■■■□ 26.5
LIN28BQ6ZN17 AC118553.2-207ENST00000640238 2901 ntTSL 57.45□□□□□ -1.228e-7■■■■□ 26.5
LIN28BQ6ZN17 CAPRIN1-217ENST00000534825 668 ntTSL 320.22■□□□□ 0.837e-13■■■■□ 26.5
LIN28BQ6ZN17 CAPRIN1-216ENST00000534042 574 ntTSL 519.48■□□□□ 0.717e-13■■■■□ 26.5
LIN28BQ6ZN17 CAPRIN1-204ENST00000526494 399 ntTSL 417.04■□□□□ 0.327e-13■■■■□ 26.5
LIN28BQ6ZN17 CAPRIN1-208ENST00000530008 580 ntTSL 45.72□□□□□ -1.497e-13■■■■□ 26.5
LIN28BQ6ZN17 CAPRIN1-214ENST00000533641 429 ntTSL 42.87□□□□□ -1.957e-13■■■■□ 26.5
LIN28BQ6ZN17 PKP4-215ENST00000494945 522 ntTSL 511.73□□□□□ -0.533e-6■■■■□ 26.5
LIN28BQ6ZN17 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC21.24■□□□□ 0.995e-10■■■■□ 26.5
LIN28BQ6ZN17 SLC25A3-207ENST00000547869 1018 ntTSL 25.87□□□□□ -1.472e-8■■■■□ 26.5
LIN28BQ6ZN17 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC24.26■■□□□ 1.471e-8■■■■□ 26.5
LIN28BQ6ZN17 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.461e-8■■■■□ 26.5
LIN28BQ6ZN17 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.81■□□□□ 0.921e-8■■■■□ 26.5
LIN28BQ6ZN17 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC13.53□□□□□ -0.241e-8■■■■□ 26.5
LIN28BQ6ZN17 XBP1-206ENST00000484256 2173 ntTSL 212.63□□□□□ -0.391e-8■■■■□ 26.5
LIN28BQ6ZN17 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.486e-7■■■■□ 26.5
LIN28BQ6ZN17 MEGF8-202ENST00000334370 10966 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.786e-7■■■■□ 26.5
LIN28BQ6ZN17 MEGF8-203ENST00000378073 11034 ntTSL 5 BASIC9.67□□□□□ -0.866e-7■■■■□ 26.5
LIN28BQ6ZN17 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.322e-7■■■■□ 26.5
LIN28BQ6ZN17 SND1-209ENST00000470723 568 ntTSL 413.85□□□□□ -0.192e-9■■■■□ 26.5
LIN28BQ6ZN17 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.112e-14■■■■□ 26.5
LIN28BQ6ZN17 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.741e-10■■■■□ 26.5
LIN28BQ6ZN17 ANAPC5-209ENST00000535641 2627 ntTSL 212.11□□□□□ -0.472e-6■■■■□ 26.5
LIN28BQ6ZN17 ANAPC5-214ENST00000539079 1715 ntTSL 1 (best)10.38□□□□□ -0.752e-6■■■■□ 26.5
LIN28BQ6ZN17 ANAPC5-219ENST00000544314 1508 ntTSL 29.12□□□□□ -0.952e-6■■■■□ 26.5
LIN28BQ6ZN17 HSPG2-211ENST00000486901 3586 ntTSL 211.71□□□□□ -0.542e-8■■■■□ 26.5
LIN28BQ6ZN17 CHMP2A-204ENST00000597848 509 ntTSL 324.29■■□□□ 1.487e-9■■■■□ 26.5
LIN28BQ6ZN17 CHMP2A-203ENST00000597209 662 ntTSL 220.38■□□□□ 0.857e-9■■■■□ 26.5
LIN28BQ6ZN17 CHMP2A-207ENST00000600804 592 ntTSL 212.81□□□□□ -0.367e-9■■■■□ 26.5
LIN28BQ6ZN17 CHMP2A-202ENST00000596708 687 ntTSL 312.22□□□□□ -0.457e-9■■■■□ 26.5
LIN28BQ6ZN17 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.96■■□□□ 1.754e-8■■■■□ 26.4
LIN28BQ6ZN17 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.07■■□□□ 1.65e-8■■■■□ 26.4
LIN28BQ6ZN17 CNP-205ENST00000486438 911 ntTSL 223.03■■□□□ 1.287e-12■■■■□ 26.4
LIN28BQ6ZN17 LYPLA1-209ENST00000520896 578 ntTSL 421.37■■□□□ 1.014e-8■■■■□ 26.4
LIN28BQ6ZN17 PRPF31-205ENST00000445811 928 ntTSL 521.12■□□□□ 0.973e-15■■■■□ 26.4
LIN28BQ6ZN17 CNP-210ENST00000592105 572 ntTSL 420.79■□□□□ 0.927e-12■■■■□ 26.4
LIN28BQ6ZN17 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.77■□□□□ 0.927e-12■■■■□ 26.4
LIN28BQ6ZN17 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.29■□□□□ 0.844e-8■■■■□ 26.4
LIN28BQ6ZN17 PRPF31-209ENST00000498612 881 ntTSL 519.99■□□□□ 0.793e-15■■■■□ 26.4
LIN28BQ6ZN17 MRPL28-207ENST00000461550 1478 ntTSL 519.81■□□□□ 0.764e-8■■■■□ 26.4
LIN28BQ6ZN17 MRPL28-208ENST00000469744 1467 ntTSL 1 (best)19.81■□□□□ 0.764e-8■■■■□ 26.4
LIN28BQ6ZN17 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.74e-8■■■■□ 26.4
LIN28BQ6ZN17 MRPL28-209ENST00000481453 2229 ntTSL 218.78■□□□□ 0.64e-8■■■■□ 26.4
LIN28BQ6ZN17 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.57■□□□□ 0.563e-15■■■■□ 26.4
LIN28BQ6ZN17 PRPF31-204ENST00000445124 886 ntTSL 518.55■□□□□ 0.563e-15■■■■□ 26.4
LIN28BQ6ZN17 PRPF31-206ENST00000447810 854 ntTSL 518.55■□□□□ 0.563e-15■■■■□ 26.4
LIN28BQ6ZN17 PRPF31-207ENST00000466404 1837 ntTSL 218.46■□□□□ 0.553e-15■■■■□ 26.4
LIN28BQ6ZN17 MRPL28-210ENST00000483764 1512 ntTSL 1 (best)18.3■□□□□ 0.524e-8■■■■□ 26.4
LIN28BQ6ZN17 NDFIP1-204ENST00000509436 584 ntTSL 517.82■□□□□ 0.444e-8■■■■□ 26.4
LIN28BQ6ZN17 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.273e-15■■■■□ 26.4
LIN28BQ6ZN17 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.39■□□□□ 0.213e-15■■■■□ 26.4
LIN28BQ6ZN17 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.22■□□□□ 0.037e-12■■■■□ 26.4
LIN28BQ6ZN17 TMEM164-206ENST00000464177 761 ntTSL 514.53□□□□□ -0.084e-8■■■■□ 26.4
LIN28BQ6ZN17 RBM28-204ENST00000478061 932 ntTSL 314.15□□□□□ -0.144e-8■■■■□ 26.4
LIN28BQ6ZN17 PLOD1-205ENST00000465920 871 ntTSL 513.41□□□□□ -0.263e-11■■■■□ 26.4
LIN28BQ6ZN17 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.377e-12■■■■□ 26.4
LIN28BQ6ZN17 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.394e-8■■■■□ 26.4
LIN28BQ6ZN17 TBC1D14-201ENST00000409757 4925 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.54e-8■■■■□ 26.4
LIN28BQ6ZN17 RBM28-202ENST00000415472 2251 ntTSL 2 BASIC11.48□□□□□ -0.574e-8■■■■□ 26.4
LIN28BQ6ZN17 AP003068.2-201ENST00000528551 477 ntTSL 310.96□□□□□ -0.655e-8■■■■□ 26.4
LIN28BQ6ZN17 TBC1D14-207ENST00000448507 4887 ntAPPRIS P3 TSL 5 BASIC10.24□□□□□ -0.774e-8■■■■□ 26.4
LIN28BQ6ZN17 PNPT1-205ENST00000447944 4411 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.911e-7■■■■□ 26.4
LIN28BQ6ZN17 TBC1D14-202ENST00000410031 4201 ntTSL 5 BASIC8.97□□□□□ -0.974e-8■■■■□ 26.4
LIN28BQ6ZN17 TBC1D14-206ENST00000446947 4021 ntTSL 5 BASIC8.94□□□□□ -0.984e-8■■■■□ 26.4
LIN28BQ6ZN17 PNPT1-201ENST00000260604 3596 ntTSL 58.75□□□□□ -1.011e-7■■■■□ 26.4
LIN28BQ6ZN17 RBM28-206ENST00000487602 715 ntTSL 58.59□□□□□ -1.034e-8■■■■□ 26.4
LIN28BQ6ZN17 PNPT1-202ENST00000415374 3308 ntTSL 58.59□□□□□ -1.041e-7■■■■□ 26.4
LIN28BQ6ZN17 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.14e-8■■■■□ 26.4
LIN28BQ6ZN17 EEF1AKMT2-206ENST00000498770 787 ntTSL 57.95□□□□□ -1.144e-8■■■■□ 26.4
LIN28BQ6ZN17 NUP98-213ENST00000524563 841 ntTSL 37.46□□□□□ -1.224e-8■■■■□ 26.4
LIN28BQ6ZN17 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.234e-8■■■■□ 26.4
LIN28BQ6ZN17 PPIE-205ENST00000456578 615 ntTSL 46.76□□□□□ -1.334e-8■■■■□ 26.4
LIN28BQ6ZN17 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.434e-8■■■■□ 26.4
LIN28BQ6ZN17 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.454e-8■■■■□ 26.4
LIN28BQ6ZN17 SMC2-205ENST00000493955 1408 ntTSL 1 (best)5.62□□□□□ -1.514e-8■■■■□ 26.4
LIN28BQ6ZN17 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.534e-8■■■■□ 26.4
LIN28BQ6ZN17 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.594e-8■■■■□ 26.4
LIN28BQ6ZN17 WDR12-205ENST00000475611 478 ntTSL 34.88□□□□□ -1.634e-8■■■■□ 26.4
LIN28BQ6ZN17 PNPT1-203ENST00000415489 555 ntTSL 34.49□□□□□ -1.691e-7■■■■□ 26.4
LIN28BQ6ZN17 RBM28-207ENST00000488249 570 ntTSL 33.19□□□□□ -1.94e-8■■■■□ 26.4
LIN28BQ6ZN17 PRPF31-208ENST00000467851 289 ntTSL 21.52□□□□□ -2.173e-15■■■■□ 26.4
LIN28BQ6ZN17 AIMP1-201ENST00000358008 2412 ntAPPRIS P3 TSL 2 BASIC9.84□□□□□ -0.831e-9■■■■□ 26.4
Retrieved 100 of 21,972 protein–RNA pairs in 242.5 ms