RNA–Protein interactions for RNA: ENST00000493955.1

SMC2-205, Transcript of structural maintenance of chromosomes 2, humanhuman

TSL 1 (best)

Gene SMC2, Length 1,408 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC2-205ENST00000493955 AEBP2Q6ZN18 517 aaPredicted RBP26.97■■□□□ 1.91
SMC2-205ENST00000493955 CHIC1Q5VXU3 224 aa25.19■■□□□ 1.62
SMC2-205ENST00000493955 SENP3Q9H4L4 574 aaPredicted RBP23.06■■□□□ 1.28
SMC2-205ENST00000493955 PHF23Q9BUL5 403 aaPredicted RBP22.72■■□□□ 1.23
SMC2-205ENST00000493955 FOXD1Q16676 465 aa21.56■■□□□ 1.04
SMC2-205ENST00000493955 POTEDQ86YR6 584 aa20.75■□□□□ 0.91
SMC2-205ENST00000493955 PLPPR3Q6T4P5 718 aa20.49■□□□□ 0.87
SMC2-205ENST00000493955 MSH5O43196 834 aa20.32■□□□□ 0.84
SMC2-205ENST00000493955 PIAS4Q8N2W9 510 aaPredicted RBP20.06■□□□□ 0.8
SMC2-205ENST00000493955 PPP6R1Q9UPN7 881 aa19.85■□□□□ 0.77
SMC2-205ENST00000493955 ADRA2BP18089 450 aa19.77■□□□□ 0.76
SMC2-205ENST00000493955 KCNA4P22459 653 aa18.54■□□□□ 0.56
SMC2-205ENST00000493955 MAPK8IP2Q13387 824 aaPredicted RBP18.3■□□□□ 0.52
SMC2-205ENST00000493955 DMRT2Q9Y5R5 561 aa18.21■□□□□ 0.51
SMC2-205ENST00000493955 PPP4R3CPQ6ZMV5 832 aa18.13■□□□□ 0.49
SMC2-205ENST00000493955 EHMT2Q96KQ7 1210 aa18.12■□□□□ 0.49
SMC2-205ENST00000493955 SCAF1Q9H7N4 1312 aaKnown RBP18.05■□□□□ 0.48
SMC2-205ENST00000493955 NCBP3Q53F19 620 aaKnown RBP17.88■□□□□ 0.45
SMC2-205ENST00000493955 SLC4A1APQ9BWU0 796 aaKnown RBP17.8■□□□□ 0.44
SMC2-205ENST00000493955 CACNB1Q02641 598 aaPredicted RBP17.74■□□□□ 0.43
SMC2-205ENST00000493955 NPM3O75607 178 aaKnown RBP17.61■□□□□ 0.41
SMC2-205ENST00000493955 DCAF8L1A6NGE4 600 aa17.56■□□□□ 0.4
SMC2-205ENST00000493955 CSRNP3Q8WYN3 585 aa17.56■□□□□ 0.4
SMC2-205ENST00000493955 CNKSR2Q8WXI2 1034 aa17.47■□□□□ 0.39
SMC2-205ENST00000493955 HOXD11P31277 338 aaPredicted RBP17.36■□□□□ 0.37
SMC2-205ENST00000493955 RNF39Q9H2S5 420 aa17.3■□□□□ 0.36
SMC2-205ENST00000493955 RNF216Q9NWF9 866 aaPredicted RBP17.13■□□□□ 0.33
SMC2-205ENST00000493955 ZBTB22O15209 634 aa17.07■□□□□ 0.32
SMC2-205ENST00000493955 C1QBPQ07021 282 aaKnown RBP17.02■□□□□ 0.31
SMC2-205ENST00000493955 DNAJC5BQ9UF47 199 aa17.01■□□□□ 0.31
SMC2-205ENST00000493955 FOXD4L1Q9NU39 408 aa16.87■□□□□ 0.29
SMC2-205ENST00000493955 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.6■□□□□ 0.251e-10■■■■■ 34.1
SMC2-205ENST00000493955 SLC4A2P04920 1241 aa16.45■□□□□ 0.22
SMC2-205ENST00000493955 MYCNP04198 464 aaPredicted RBP16.28■□□□□ 0.2
SMC2-205ENST00000493955 ATXN8OSP0DMR3 200 aa16.21■□□□□ 0.19
SMC2-205ENST00000493955 U3KPZ7 1027 aaPredicted RBP16.18■□□□□ 0.18
SMC2-205ENST00000493955 POTEHQ6S545 545 aa16.12■□□□□ 0.17
SMC2-205ENST00000493955 CAPN15O75808 1086 aa16.11■□□□□ 0.17
SMC2-205ENST00000493955 SPINK5Q9NQ38 1064 aaPredicted RBP16.09■□□□□ 0.17
SMC2-205ENST00000493955 DSG3P32926 999 aa16.07■□□□□ 0.16
SMC2-205ENST00000493955 FKBP8Q14318 412 aa15.85■□□□□ 0.13
SMC2-205ENST00000493955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.8■□□□□ 0.12
SMC2-205ENST00000493955 HNRNPUL2Q1KMD3 747 aaKnown RBP15.8■□□□□ 0.12
SMC2-205ENST00000493955 SAMD1Q6SPF0 538 aaPredicted RBP15.77■□□□□ 0.12
SMC2-205ENST00000493955 ATF5Q9Y2D1 282 aaPredicted RBP15.76■□□□□ 0.11
SMC2-205ENST00000493955 TRHP20396 242 aaPredicted RBP15.75■□□□□ 0.11
SMC2-205ENST00000493955 AMER1Q5JTC6 1135 aaPredicted RBP15.74■□□□□ 0.11
SMC2-205ENST00000493955 ABCB7O75027 752 aa15.7■□□□□ 0.1
SMC2-205ENST00000493955 RTN4Q9NQC3 1192 aaKnown RBP15.7■□□□□ 0.1
SMC2-205ENST00000493955 APLP2Q06481 763 aa15.66■□□□□ 0.1
SMC2-205ENST00000493955 ZNF219Q9P2Y4 722 aaPredicted RBP15.64■□□□□ 0.09
SMC2-205ENST00000493955 SLC24A1O60721 1099 aa15.39■□□□□ 0.05
SMC2-205ENST00000493955 RBM42Q9BTD8 480 aaKnown RBP15.33■□□□□ 0.04
SMC2-205ENST00000493955 POLA2Q14181 598 aa15.21■□□□□ 0.03
SMC2-205ENST00000493955 CHRDL2Q6WN34 429 aa15.18■□□□□ 0.02
SMC2-205ENST00000493955 SPDYE4A6NLX3 237 aa15.14■□□□□ 0.01
SMC2-205ENST00000493955 MKRN4PQ13434 485 aaPredicted RBP15.11■□□□□ 0.01
SMC2-205ENST00000493955 FBXO3Q9UK99 471 aa15.1■□□□□ 0.01
SMC2-205ENST00000493955 FBLN2P98095 1184 aa15.08■□□□□ 0
SMC2-205ENST00000493955 PROM2Q8N271 834 aa15□□□□□ -0.01
SMC2-205ENST00000493955 AKT1S1Q96B36 256 aa14.89□□□□□ -0.03
SMC2-205ENST00000493955 VASPP50552 380 aaPredicted RBP14.87□□□□□ -0.03
SMC2-205ENST00000493955 SP7Q8TDD2 431 aaPredicted RBP14.84□□□□□ -0.03
SMC2-205ENST00000493955 ZBTB12Q9Y330 459 aaPredicted RBP14.83□□□□□ -0.03
SMC2-205ENST00000493955 REM2Q8IYK8 340 aaPredicted RBP14.77□□□□□ -0.04
SMC2-205ENST00000493955 PIP4P2Q8N4L2 257 aa14.74□□□□□ -0.05
SMC2-205ENST00000493955 OSCARQ8IYS5 282 aa14.73□□□□□ -0.05
SMC2-205ENST00000493955 IFNLR1Q8IU57 520 aaPredicted RBP14.7□□□□□ -0.06
SMC2-205ENST00000493955 HAX1O00165 279 aa14.62□□□□□ -0.07
SMC2-205ENST00000493955 PITPNM1O00562 1244 aa14.62□□□□□ -0.07
SMC2-205ENST00000493955 FXR2P51116 673 aaKnown RBP eCLIP14.56□□□□□ -0.086e-6■■■■□ 25.8
SMC2-205ENST00000493955 ZNF692Q9BU19 519 aaPredicted RBP14.53□□□□□ -0.08
SMC2-205ENST00000493955 PLCB2Q00722 1185 aa14.5□□□□□ -0.09
SMC2-205ENST00000493955 PKD2Q13563 968 aa14.49□□□□□ -0.09
SMC2-205ENST00000493955 SPDYE2BA6NHP3 402 aa14.49□□□□□ -0.09
SMC2-205ENST00000493955 DCAF8L2P0C7V8 631 aa14.49□□□□□ -0.09
SMC2-205ENST00000493955 SPDYE6P0CI01 402 aa14.49□□□□□ -0.09
SMC2-205ENST00000493955 SPDYE2Q495Y8 402 aa14.49□□□□□ -0.09
SMC2-205ENST00000493955 STAG3Q9UJ98 1225 aa14.45□□□□□ -0.1
SMC2-205ENST00000493955 SSUH2Q9Y2M2 353 aa14.45□□□□□ -0.1
SMC2-205ENST00000493955 KLHL34Q8N239 644 aa14.42□□□□□ -0.1
SMC2-205ENST00000493955 SPOCK2Q92563 424 aa14.41□□□□□ -0.1
SMC2-205ENST00000493955 EVX2Q03828 476 aa14.4□□□□□ -0.1
SMC2-205ENST00000493955 PABPN1Q86U42 306 aaKnown RBP eCLIP14.36□□□□□ -0.11
SMC2-205ENST00000493955 PLCD3Q8N3E9 789 aa14.34□□□□□ -0.11
SMC2-205ENST00000493955 HAP1P54257 671 aaPredicted RBP14.29□□□□□ -0.12
SMC2-205ENST00000493955 ECM2O94769 699 aaPredicted RBP14.28□□□□□ -0.12
SMC2-205ENST00000493955 MIER1Q8N108 512 aa14.26□□□□□ -0.13
SMC2-205ENST00000493955 PRKAR2AP13861 404 aaKnown RBP14.25□□□□□ -0.13
SMC2-205ENST00000493955 CLEC11AQ9Y240 323 aa14.24□□□□□ -0.13
SMC2-205ENST00000493955 SPDYE1Q8NFV5 336 aaPredicted RBP14.21□□□□□ -0.13
SMC2-205ENST00000493955 PLEKHG5O94827 1062 aa14.16□□□□□ -0.14
SMC2-205ENST00000493955 BBXQ8WY36 941 aaPredicted RBP14.15□□□□□ -0.14
SMC2-205ENST00000493955 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.15□□□□□ -0.14
SMC2-205ENST00000493955 ZBTB47Q9UFB7 747 aaPredicted RBP14.15□□□□□ -0.14
SMC2-205ENST00000493955 C19orf67A6NJJ6 358 aa14.11□□□□□ -0.15
SMC2-205ENST00000493955 RGL2O15211 777 aa14.11□□□□□ -0.15
SMC2-205ENST00000493955 NPM1P06748 294 aaKnown RBP eCLIP14.09□□□□□ -0.15
SMC2-205ENST00000493955 VSIG10Q8N0Z9 540 aa14.09□□□□□ -0.15
SMC2-205ENST00000493955 CIZ1Q9ULV3 898 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms