RNA–Protein interactions for RNA: ENST00000483764.5

MRPL28-210, Transcript of mitochondrial ribosomal protein L28, humanhuman

TSL 1 (best)

Gene MRPL28, Length 1,512 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL28-210ENST00000483764 NISCHQ9Y2I1 1504 aa39.58■■■■□ 3.93
MRPL28-210ENST00000483764 CCDC180Q9P1Z9 1646 aa34.68■■■■□ 3.14
MRPL28-210ENST00000483764 ABCC9O60706 1549 aa33.2■■■□□ 2.91
MRPL28-210ENST00000483764 ZCCHC6Q5VYS8 1495 aaKnown RBP33.15■■■□□ 2.9
MRPL28-210ENST00000483764 DCAF8L2P0C7V8 631 aa32.87■■■□□ 2.85
MRPL28-210ENST00000483764 DCAF1Q9Y4B6 1507 aa32.75■■■□□ 2.83
MRPL28-210ENST00000483764 MYO15BQ96JP2 1530 aa32.54■■■□□ 2.8
MRPL28-210ENST00000483764 NACADO15069 1562 aa32.45■■■□□ 2.78
MRPL28-210ENST00000483764 RB1CC1Q8TDY2 1594 aa32.26■■■□□ 2.75
MRPL28-210ENST00000483764 SHROOM4Q9ULL8 1493 aa31.96■■■□□ 2.71
MRPL28-210ENST00000483764 SCRIBQ14160 1630 aa31.82■■■□□ 2.68
MRPL28-210ENST00000483764 UNC13AQ9UPW8 1703 aa31.47■■■□□ 2.63
MRPL28-210ENST00000483764 BICRAQ9NZM4 1560 aa31.26■■■□□ 2.6
MRPL28-210ENST00000483764 PABPN1Q86U42 306 aaKnown RBP eCLIP31.25■■■□□ 2.595e-7■■■■■ 28.2
MRPL28-210ENST00000483764 CECR2Q9BXF3 1484 aa30.78■■■□□ 2.52
MRPL28-210ENST00000483764 BAZ1AQ9NRL2 1556 aaPredicted RBP30.6■■■□□ 2.49
MRPL28-210ENST00000483764 SUPT5HO00267 1087 aaKnown RBP30.57■■■□□ 2.49
MRPL28-210ENST00000483764 RSF1Q96T23 1441 aaPredicted RBP30.55■■■□□ 2.48
MRPL28-210ENST00000483764 MROH2BQ7Z745 1585 aa30.54■■■□□ 2.48
MRPL28-210ENST00000483764 SMARCA4P51532 1647 aa30.48■■■□□ 2.47
MRPL28-210ENST00000483764 EIF4G1Q04637 1599 aaKnown RBP30.37■■■□□ 2.45
MRPL28-210ENST00000483764 WIZO95785 1651 aa30.24■■■□□ 2.43
MRPL28-210ENST00000483764 PEG3Q9GZU2 1588 aa30.16■■■□□ 2.42
MRPL28-210ENST00000483764 ATAD2BQ9ULI0 1458 aa30.14■■■□□ 2.41
MRPL28-210ENST00000483764 SMARCA2P51531 1590 aa30.1■■■□□ 2.41
MRPL28-210ENST00000483764 CC2D2AQ9P2K1 1620 aa30.01■■■□□ 2.39
MRPL28-210ENST00000483764 NCAPD3P42695 1498 aa29.97■■■□□ 2.39
MRPL28-210ENST00000483764 TOP2AP11388 1531 aaKnown RBP29.95■■■□□ 2.39
MRPL28-210ENST00000483764 BAZ1BQ9UIG0 1483 aaKnown RBP29.93■■■□□ 2.38
MRPL28-210ENST00000483764 HMGXB3Q12766 1538 aa29.85■■■□□ 2.37
MRPL28-210ENST00000483764 DNAJC5BQ9UF47 199 aa29.82■■■□□ 2.36
MRPL28-210ENST00000483764 CCDC88BA6NC98 1476 aa29.66■■■□□ 2.34
MRPL28-210ENST00000483764 CADPSQ9ULU8 1353 aa29.18■■■□□ 2.26
MRPL28-210ENST00000483764 CFTRP13569 1480 aa29.18■■■□□ 2.26
MRPL28-210ENST00000483764 CHIC1Q5VXU3 224 aa29.06■■■□□ 2.24
MRPL28-210ENST00000483764 NESP48681 1621 aa28.99■■■□□ 2.23
MRPL28-210ENST00000483764 LAMC3Q9Y6N6 1575 aa28.99■■■□□ 2.23
MRPL28-210ENST00000483764 PRDM2Q13029 1718 aa28.88■■■□□ 2.21
MRPL28-210ENST00000483764 ABCC8Q09428 1581 aa28.85■■■□□ 2.21
MRPL28-210ENST00000483764 PDS5BQ9NTI5 1447 aa28.82■■■□□ 2.2
MRPL28-210ENST00000483764 FANCD2Q9BXW9 1451 aa28.82■■■□□ 2.2
MRPL28-210ENST00000483764 TRIM41Q8WV44 630 aa28.82■■■□□ 2.2
MRPL28-210ENST00000483764 WRNQ14191 1432 aaPredicted RBP eCLIP28.78■■■□□ 2.2
MRPL28-210ENST00000483764 CEP164Q9UPV0 1460 aa28.68■■■□□ 2.18
MRPL28-210ENST00000483764 SYNJ1O43426 1573 aa28.62■■■□□ 2.17
MRPL28-210ENST00000483764 CUX1P39880 1505 aa28.59■■■□□ 2.17
MRPL28-210ENST00000483764 KIF21AQ7Z4S6 1674 aa28.59■■■□□ 2.17
MRPL28-210ENST00000483764 TOP2BQ02880 1626 aa28.56■■■□□ 2.16
MRPL28-210ENST00000483764 ERCC6Q03468 1493 aa28.53■■■□□ 2.16
MRPL28-210ENST00000483764 BIVM-ERCC5R4GMW8 1640 aa28.52■■■□□ 2.16
MRPL28-210ENST00000483764 URB2Q14146 1524 aaKnown RBP28.47■■■□□ 2.15
MRPL28-210ENST00000483764 DNMBPQ6XZF7 1577 aa28.47■■■□□ 2.15
MRPL28-210ENST00000483764 TOPBP1Q92547 1522 aa28.46■■■□□ 2.15
MRPL28-210ENST00000483764 MRC2Q9UBG0 1479 aa28.44■■■□□ 2.14
MRPL28-210ENST00000483764 FGD5Q6ZNL6 1462 aa28.35■■■□□ 2.13
MRPL28-210ENST00000483764 WDR62O43379 1518 aa28.29■■■□□ 2.12
MRPL28-210ENST00000483764 POLA1P09884 1462 aaPredicted RBP28.28■■■□□ 2.12
MRPL28-210ENST00000483764 THOC2Q8NI27 1593 aaKnown RBP28.26■■■□□ 2.12
MRPL28-210ENST00000483764 SOGA1O94964 1423 aa28.26■■■□□ 2.11
MRPL28-210ENST00000483764 FAM9AQ8IZU1 332 aaPredicted RBP28.23■■■□□ 2.11
MRPL28-210ENST00000483764 RAD54L2Q9Y4B4 1467 aa28.19■■■□□ 2.1
MRPL28-210ENST00000483764 EEA1Q15075 1411 aa28.16■■■□□ 2.1
MRPL28-210ENST00000483764 RUSC2Q8N2Y8 1516 aa28.16■■■□□ 2.1
MRPL28-210ENST00000483764 CUX2O14529 1486 aa28.11■■■□□ 2.09
MRPL28-210ENST00000483764 ABCA10Q8WWZ4 1543 aa28.11■■■□□ 2.09
MRPL28-210ENST00000483764 KIF27Q86VH2 1401 aa28.1■■■□□ 2.09
MRPL28-210ENST00000483764 CSRNP3Q8WYN3 585 aa28.07■■■□□ 2.08
MRPL28-210ENST00000483764 TARBP1Q13395 1621 aaKnown RBP28.04■■■□□ 2.08
MRPL28-210ENST00000483764 IFT140Q96RY7 1462 aa28.04■■■□□ 2.08
MRPL28-210ENST00000483764 TDRD9Q8NDG6 1382 aaKnown RBP27.98■■■□□ 2.07
MRPL28-210ENST00000483764 WDR97A6NE52 1622 aa27.98■■■□□ 2.07
MRPL28-210ENST00000483764 LOC105371045A0A1W2PR82 267 aa27.92■■■□□ 2.06
MRPL28-210ENST00000483764 IGF1RP08069 1367 aa27.91■■■□□ 2.06
MRPL28-210ENST00000483764 GAPVD1Q14C86 1478 aa27.89■■■□□ 2.06
MRPL28-210ENST00000483764 ABCA5Q8WWZ7 1642 aa27.87■■■□□ 2.05
MRPL28-210ENST00000483764 ZNF608Q9ULD9 1512 aaPredicted RBP27.87■■■□□ 2.05
MRPL28-210ENST00000483764 AQRO60306 1485 aaKnown RBP eCLIP27.86■■■□□ 2.054e-7■■■■■ 27.1
MRPL28-210ENST00000483764 EHMT2Q96KQ7 1210 aa27.82■■■□□ 2.04
MRPL28-210ENST00000483764 PRXQ9BXM0 1461 aa27.79■■■□□ 2.04
MRPL28-210ENST00000483764 ERICH3Q5RHP9 1530 aa27.77■■■□□ 2.04
MRPL28-210ENST00000483764 KIF21BO75037 1637 aa27.75■■■□□ 2.03
MRPL28-210ENST00000483764 CARMIL1Q5VZK9 1371 aa27.75■■■□□ 2.03
MRPL28-210ENST00000483764 GRIN2BQ13224 1484 aa27.74■■■□□ 2.03
MRPL28-210ENST00000483764 EIF4G3O43432 1585 aaKnown RBP27.74■■■□□ 2.03
MRPL28-210ENST00000483764 GOLGA3Q08378 1498 aa27.72■■■□□ 2.03
MRPL28-210ENST00000483764 RAPGEF2Q9Y4G8 1499 aa27.69■■■□□ 2.02
MRPL28-210ENST00000483764 PBRM1Q86U86 1689 aa27.67■■■□□ 2.02
MRPL28-210ENST00000483764 CUL7Q14999 1698 aa27.66■■■□□ 2.02
MRPL28-210ENST00000483764 UBTFP17480 764 aaKnown RBP27.66■■■□□ 2.02
MRPL28-210ENST00000483764 FHAD1B1AJZ9 1412 aa27.6■■■□□ 2.01
MRPL28-210ENST00000483764 SNAPC4Q5SXM2 1469 aa27.58■■■□□ 2.01
MRPL28-210ENST00000483764 TNIKQ9UKE5 1360 aa27.58■■■□□ 2.01
MRPL28-210ENST00000483764 MAGI1Q96QZ7 1491 aaPredicted RBP27.55■■■□□ 2
MRPL28-210ENST00000483764 ADAMTS12P58397 1594 aa27.54■■■□□ 2
MRPL28-210ENST00000483764 SYNJ2O15056 1496 aa27.45■■□□□ 1.98
MRPL28-210ENST00000483764 CHMP7Q8WUX9 453 aaPredicted RBP27.44■■□□□ 1.98
MRPL28-210ENST00000483764 DNAJC5Q9H3Z4 198 aa27.41■■□□□ 1.98
MRPL28-210ENST00000483764 FBLN2P98095 1184 aa27.4■■□□□ 1.98
MRPL28-210ENST00000483764 GRIN2AQ12879 1464 aa27.38■■□□□ 1.97
MRPL28-210ENST00000483764 CEP162Q5TB80 1403 aa27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms