Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
DDX28Q9NUL7 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 BCL2-203ENST00000589955 5011 ntBASIC18.37■□□□□ 0.53
DDX28Q9NUL7 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 AC098818.2-201ENST00000564925 2320 ntBASIC18.37■□□□□ 0.53
DDX28Q9NUL7 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.37■□□□□ 0.53
DDX28Q9NUL7 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 SMG8-203ENST00000578922 2178 ntBASIC18.37■□□□□ 0.53
DDX28Q9NUL7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
DDX28Q9NUL7 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 EEF1DP3-203ENST00000566025 782 ntBASIC18.36■□□□□ 0.53
DDX28Q9NUL7 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 MIR6821-201ENST00000617625 74 ntBASIC18.36■□□□□ 0.53
DDX28Q9NUL7 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.36■□□□□ 0.53
DDX28Q9NUL7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 BX323043.1-201ENST00000641006 1765 ntBASIC18.36■□□□□ 0.53
DDX28Q9NUL7 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
DDX28Q9NUL7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 AC053503.5-201ENST00000601508 636 ntBASIC18.35■□□□□ 0.53
DDX28Q9NUL7 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
DDX28Q9NUL7 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 IRS3P-201ENST00000223076 1006 ntBASIC18.34■□□□□ 0.53
DDX28Q9NUL7 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 AC097381.1-201ENST00000429019 1296 ntBASIC18.34■□□□□ 0.53
DDX28Q9NUL7 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
DDX28Q9NUL7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms