Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC23.95■■□□□ 1.42
DDX4Q9NQI0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
DDX4Q9NQI0 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
DDX4Q9NQI0 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 ECEL1P3-201ENST00000427961 737 ntBASIC23.93■■□□□ 1.42
DDX4Q9NQI0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 PRKY-204ENST00000533551 1019 ntBASIC23.93■■□□□ 1.42
DDX4Q9NQI0 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 CABP2-204ENST00000636477 941 ntTSL 5 BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 LINC00565-201ENST00000562710 2331 ntBASIC23.93■■□□□ 1.42
DDX4Q9NQI0 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
DDX4Q9NQI0 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
DDX4Q9NQI0 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.91■■□□□ 1.42
DDX4Q9NQI0 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 AC211429.1-201ENST00000415277 523 ntBASIC23.91■■□□□ 1.42
DDX4Q9NQI0 F2R-202ENST00000505600 442 ntTSL 2 BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 BX088651.1-201ENST00000540551 451 ntBASIC23.91■■□□□ 1.42
DDX4Q9NQI0 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 REXO1L12P-201ENST00000622156 912 ntBASIC23.91■■□□□ 1.42
DDX4Q9NQI0 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
DDX4Q9NQI0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 AC026310.3-201ENST00000625186 2373 ntBASIC23.9■■□□□ 1.42
DDX4Q9NQI0 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 AL135905.2-201ENST00000584934 1404 ntBASIC23.9■■□□□ 1.42
DDX4Q9NQI0 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
DDX4Q9NQI0 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
DDX4Q9NQI0 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC23.89■■□□□ 1.42
DDX4Q9NQI0 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
DDX4Q9NQI0 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
DDX4Q9NQI0 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
DDX4Q9NQI0 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC23.89■■□□□ 1.41
DDX4Q9NQI0 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC23.89■■□□□ 1.41
DDX4Q9NQI0 PENK-204ENST00000518770 863 ntTSL 2 BASIC23.89■■□□□ 1.41
DDX4Q9NQI0 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC23.89■■□□□ 1.41
DDX4Q9NQI0 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
DDX4Q9NQI0 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
DDX4Q9NQI0 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
DDX4Q9NQI0 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC23.88■■□□□ 1.41
DDX4Q9NQI0 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms