Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC27.59■■■□□ 2.012e-7■■□□□ 13.8
DDX55Q8NHQ9 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC26.7■■□□□ 1.866e-22■■□□□ 13.8
DDX55Q8NHQ9 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.685e-17■■□□□ 13.8
DDX55Q8NHQ9 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.362e-7■■□□□ 13.8
DDX55Q8NHQ9 LEMD2-202ENST00000421671 2323 ntTSL 323.03■■□□□ 1.285e-8■■□□□ 13.8
DDX55Q8NHQ9 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC22.45■■□□□ 1.182e-7■■□□□ 13.8
DDX55Q8NHQ9 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.152e-7■■□□□ 13.8
DDX55Q8NHQ9 FLOT1-212ENST00000487376 1583 ntTSL 521.85■■□□□ 1.095e-17■■□□□ 13.8
DDX55Q8NHQ9 MBD3-209ENST00000592012 2379 ntTSL 521.44■■□□□ 1.024e-7■■□□□ 13.8
DDX55Q8NHQ9 LEMD2-206ENST00000506578 1684 ntTSL 520.76■□□□□ 0.915e-8■■□□□ 13.8
DDX55Q8NHQ9 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.872e-7■■□□□ 13.8
DDX55Q8NHQ9 CARS-209ENST00000470221 2466 ntTSL 220.11■□□□□ 0.812e-7■■□□□ 13.8
DDX55Q8NHQ9 LPCAT1-203ENST00000503252 2694 ntTSL 220.04■□□□□ 0.82e-16■■□□□ 13.8
DDX55Q8NHQ9 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.94■□□□□ 0.784e-7■■□□□ 13.8
DDX55Q8NHQ9 LPCAT1-202ENST00000475622 5610 ntTSL 519.63■□□□□ 0.732e-16■■□□□ 13.8
DDX55Q8NHQ9 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.735e-8■■□□□ 13.8
DDX55Q8NHQ9 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.645e-8■■□□□ 13.8
DDX55Q8NHQ9 CARS-208ENST00000466442 2671 ntTSL 218.13■□□□□ 0.492e-7■■□□□ 13.8
DDX55Q8NHQ9 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.89■□□□□ 0.292e-7■■□□□ 13.8
DDX55Q8NHQ9 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.37■□□□□ 0.216e-22■■□□□ 13.8
DDX55Q8NHQ9 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.036e-22■■□□□ 13.8
DDX55Q8NHQ9 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.032e-7■■□□□ 13.8
DDX55Q8NHQ9 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.022e-7■■□□□ 13.8
DDX55Q8NHQ9 CARS-214ENST00000529772 2637 ntTSL 2 BASIC14.77□□□□□ -0.052e-7■■□□□ 13.8
DDX55Q8NHQ9 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.142e-16■■□□□ 13.8
DDX55Q8NHQ9 INPPL1-210ENST00000541303 1238 ntTSL 213.8□□□□□ -0.22e-9■■□□□ 13.8
DDX55Q8NHQ9 INPPL1-216ENST00000545355 1124 ntTSL 513.63□□□□□ -0.232e-9■■□□□ 13.8
DDX55Q8NHQ9 CARS-202ENST00000380525 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.252e-7■■□□□ 13.8
DDX55Q8NHQ9 LEMD2-209ENST00000511171 4870 ntTSL 213.35□□□□□ -0.275e-8■■□□□ 13.8
DDX55Q8NHQ9 CARS-201ENST00000278224 2491 ntTSL 1 (best) BASIC13.13□□□□□ -0.312e-7■■□□□ 13.8
DDX55Q8NHQ9 CARS-212ENST00000526890 5732 ntTSL 212.41□□□□□ -0.422e-7■■□□□ 13.8
DDX55Q8NHQ9 CARS-215ENST00000531387 2805 ntTSL 211.27□□□□□ -0.612e-7■■□□□ 13.8
DDX55Q8NHQ9 CARS-210ENST00000484484 1151 ntTSL 511.1□□□□□ -0.632e-7■■□□□ 13.8
DDX55Q8NHQ9 NEDD4L-201ENST00000256830 2920 ntTSL 5 BASIC10□□□□□ -0.816e-22■■□□□ 13.8
DDX55Q8NHQ9 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.846e-22■■□□□ 13.8
DDX55Q8NHQ9 CAB39-207ENST00000614925 1619 ntTSL 5 BASIC9.73□□□□□ -0.852e-7■■□□□ 13.8
DDX55Q8NHQ9 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.18e-19■■□□□ 13.8
DDX55Q8NHQ9 CDCA3-209ENST00000544610 624 ntTSL 38.09□□□□□ -1.112e-7■■□□□ 13.8
DDX55Q8NHQ9 CAB39-204ENST00000478152 654 ntTSL 27.49□□□□□ -1.212e-7■■□□□ 13.8
DDX55Q8NHQ9 NRIP3-205ENST00000534759 567 ntTSL 34.93□□□□□ -1.622e-7■■□□□ 13.8
DDX55Q8NHQ9 CIZ1-220ENST00000485862 843 ntTSL 219.54■□□□□ 0.724e-6■■□□□ 13.8
DDX55Q8NHQ9 CIZ1-210ENST00000461765 677 ntTSL 310.74□□□□□ -0.694e-6■■□□□ 13.8
DDX55Q8NHQ9 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC25.87■■□□□ 1.736e-8■■□□□ 13.8
DDX55Q8NHQ9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC25.02■■□□□ 1.66e-8■■□□□ 13.8
DDX55Q8NHQ9 IER3-202ENST00000376377 1350 ntBASIC22.86■■□□□ 1.256e-21■■□□□ 13.8
DDX55Q8NHQ9 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.396e-21■■□□□ 13.8
DDX55Q8NHQ9 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.392e-10■■□□□ 13.8
DDX55Q8NHQ9 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.132e-10■■□□□ 13.8
DDX55Q8NHQ9 AKR1A1-205ENST00000473038 948 ntTSL 217.99■□□□□ 0.472e-10■■□□□ 13.8
DDX55Q8NHQ9 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.392e-10■■□□□ 13.8
DDX55Q8NHQ9 AKR1A1-206ENST00000475919 630 ntTSL 214.16□□□□□ -0.142e-10■■□□□ 13.8
DDX55Q8NHQ9 AKR1A1-213ENST00000497973 667 ntTSL 214.04□□□□□ -0.162e-10■■□□□ 13.8
DDX55Q8NHQ9 AKR1A1-211ENST00000495913 421 ntTSL 313.08□□□□□ -0.322e-10■■□□□ 13.8
DDX55Q8NHQ9 AKR1A1-210ENST00000487654 552 ntTSL 29.01□□□□□ -0.972e-10■■□□□ 13.8
DDX55Q8NHQ9 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.591e-6■■□□□ 13.7
DDX55Q8NHQ9 MRPL51-204ENST00000540949 343 ntTSL 221.34■■□□□ 1.011e-6■■□□□ 13.7
DDX55Q8NHQ9 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC17.78■□□□□ 0.441e-6■■□□□ 13.7
DDX55Q8NHQ9 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC15.54■□□□□ 0.081e-6■■□□□ 13.7
DDX55Q8NHQ9 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC15.54■□□□□ 0.081e-6■■□□□ 13.7
DDX55Q8NHQ9 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.77□□□□□ -1.651e-6■■□□□ 13.7
DDX55Q8NHQ9 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.591e-6■■□□□ 13.7
DDX55Q8NHQ9 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.94■□□□□ 0.31e-6■■□□□ 13.7
DDX55Q8NHQ9 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.59■□□□□ 0.251e-6■■□□□ 13.7
DDX55Q8NHQ9 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.182e-8■■□□□ 13.7
DDX55Q8NHQ9 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.132e-8■■□□□ 13.7
DDX55Q8NHQ9 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC15.03■□□□□ -02e-8■■□□□ 13.7
DDX55Q8NHQ9 BCKDHA-207ENST00000544905 562 ntTSL 212.3□□□□□ -0.442e-8■■□□□ 13.7
DDX55Q8NHQ9 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.951e-9■■□□□ 13.7
DDX55Q8NHQ9 ADAMTSL4-206ENST00000489159 1803 ntTSL 219.55■□□□□ 0.721e-9■■□□□ 13.7
DDX55Q8NHQ9 DDX3X-209ENST00000611968 630 ntTSL 318.99■□□□□ 0.634e-14■■□□□ 13.7
DDX55Q8NHQ9 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.271e-9■■□□□ 13.7
DDX55Q8NHQ9 RPL9-206ENST00000504470 689 ntTSL 216.41■□□□□ 0.221e-9■■□□□ 13.7
DDX55Q8NHQ9 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.181e-9■■□□□ 13.7
DDX55Q8NHQ9 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.061e-9■■□□□ 13.7
DDX55Q8NHQ9 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.071e-9■■□□□ 13.7
DDX55Q8NHQ9 ADAMTSL4-202ENST00000369038 4167 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.181e-9■■□□□ 13.7
DDX55Q8NHQ9 RPL9-211ENST00000514842 2153 ntTSL 512.45□□□□□ -0.421e-9■■□□□ 13.7
DDX55Q8NHQ9 DDX3X-202ENST00000441189 1051 ntTSL 2 BASIC10.27□□□□□ -0.774e-14■■□□□ 13.7
DDX55Q8NHQ9 CSNK2A1-202ENST00000349736 4299 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.813e-13■■□□□ 13.7
DDX55Q8NHQ9 RPL9-205ENST00000503277 769 ntTSL 29.76□□□□□ -0.851e-9■■□□□ 13.7
DDX55Q8NHQ9 CSNK2A1-201ENST00000217244 4416 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.963e-13■■□□□ 13.7
DDX55Q8NHQ9 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC7.02□□□□□ -1.293e-13■■□□□ 13.7
DDX55Q8NHQ9 RPL9-209ENST00000511075 1028 ntTSL 26.89□□□□□ -1.311e-9■■□□□ 13.7
DDX55Q8NHQ9 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.421e-9■■□□□ 13.7
DDX55Q8NHQ9 RPL9-202ENST00000437992 579 ntTSL 45.82□□□□□ -1.481e-9■■□□□ 13.7
DDX55Q8NHQ9 RPL9-208ENST00000508595 667 ntTSL 34.94□□□□□ -1.621e-9■■□□□ 13.7
DDX55Q8NHQ9 RPL9-204ENST00000503040 571 ntTSL 44.57□□□□□ -1.681e-9■■□□□ 13.7
DDX55Q8NHQ9 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC24.05■■□□□ 1.442e-7■■□□□ 13.7
DDX55Q8NHQ9 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.142e-7■■□□□ 13.7
DDX55Q8NHQ9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.7■□□□□ 0.742e-7■■□□□ 13.7
DDX55Q8NHQ9 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.33■□□□□ 0.522e-7■■□□□ 13.7
DDX55Q8NHQ9 MXRA8-207ENST00000474033 1171 ntTSL 1 (best)16.92■□□□□ 0.32e-7■■□□□ 13.7
DDX55Q8NHQ9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.55■□□□□ 0.722e-7■■□□□ 13.7
DDX55Q8NHQ9 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.27■□□□□ 0.682e-7■■□□□ 13.7
DDX55Q8NHQ9 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.63■□□□□ 0.252e-7■■□□□ 13.7
DDX55Q8NHQ9 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.162e-7■■□□□ 13.7
DDX55Q8NHQ9 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC20.16■□□□□ 0.821e-8■■□□□ 13.7
DDX55Q8NHQ9 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC20.16■□□□□ 0.821e-8■■□□□ 13.7
DDX55Q8NHQ9 SNHG8-203ENST00000602520 327 ntTSL 29.96□□□□□ -0.821e-8■■□□□ 13.7
DDX55Q8NHQ9 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC7.42□□□□□ -1.221e-8■■□□□ 13.7
Retrieved 100 of 15,504 protein–RNA pairs in 119.1 ms