RNA–Protein interactions for RNA: ENST00000544610.1

CDCA3-209, Transcript of cell division cycle associated 3, humanhuman

TSL 3

Gene CDCA3, Length 624 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-209ENST00000544610 AEBP2Q6ZN18 517 aaPredicted RBP18.18■□□□□ 0.5
CDCA3-209ENST00000544610 CHIC1Q5VXU3 224 aa17.1■□□□□ 0.33
CDCA3-209ENST00000544610 NISCHQ9Y2I1 1504 aa16.29■□□□□ 0.2
CDCA3-209ENST00000544610 SENP3Q9H4L4 574 aaPredicted RBP15.79■□□□□ 0.12
CDCA3-209ENST00000544610 POTEDQ86YR6 584 aa15.59■□□□□ 0.09
CDCA3-209ENST00000544610 PHF23Q9BUL5 403 aaPredicted RBP15.39■□□□□ 0.05
CDCA3-209ENST00000544610 FOXD1Q16676 465 aa14.77□□□□□ -0.05
CDCA3-209ENST00000544610 ABCC9O60706 1549 aa14.7□□□□□ -0.06
CDCA3-209ENST00000544610 CCDC180Q9P1Z9 1646 aa14.67□□□□□ -0.06
CDCA3-209ENST00000544610 MSH5O43196 834 aa14.3□□□□□ -0.12
CDCA3-209ENST00000544610 RB1CC1Q8TDY2 1594 aa13.99□□□□□ -0.17
CDCA3-209ENST00000544610 NACADO15069 1562 aa13.88□□□□□ -0.19
CDCA3-209ENST00000544610 DNAJC5BQ9UF47 199 aa13.85□□□□□ -0.19
CDCA3-209ENST00000544610 MYO15BQ96JP2 1530 aa13.69□□□□□ -0.22
CDCA3-209ENST00000544610 DCAF8L2P0C7V8 631 aa13.68□□□□□ -0.22
CDCA3-209ENST00000544610 UNC13AQ9UPW8 1703 aa13.65□□□□□ -0.22
CDCA3-209ENST00000544610 PABPN1Q86U42 306 aaKnown RBP eCLIP13.65□□□□□ -0.22
CDCA3-209ENST00000544610 BICRAQ9NZM4 1560 aa13.59□□□□□ -0.23
CDCA3-209ENST00000544610 PIAS4Q8N2W9 510 aaPredicted RBP13.58□□□□□ -0.24
CDCA3-209ENST00000544610 ZCCHC6Q5VYS8 1495 aaKnown RBP13.5□□□□□ -0.25
CDCA3-209ENST00000544610 DCAF1Q9Y4B6 1507 aa13.48□□□□□ -0.25
CDCA3-209ENST00000544610 SHROOM4Q9ULL8 1493 aa13.44□□□□□ -0.26
CDCA3-209ENST00000544610 SCRIBQ14160 1630 aa13.33□□□□□ -0.28
CDCA3-209ENST00000544610 CC2D2AQ9P2K1 1620 aa13.3□□□□□ -0.28
CDCA3-209ENST00000544610 CECR2Q9BXF3 1484 aa13.27□□□□□ -0.29
CDCA3-209ENST00000544610 EIF4G1Q04637 1599 aaKnown RBP13.26□□□□□ -0.29
CDCA3-209ENST00000544610 PPP6R1Q9UPN7 881 aa12.99□□□□□ -0.33
CDCA3-209ENST00000544610 ADRA2BP18089 450 aa12.9□□□□□ -0.34
CDCA3-209ENST00000544610 CACNB1Q02641 598 aaPredicted RBP12.85□□□□□ -0.35
CDCA3-209ENST00000544610 NCAPD3P42695 1498 aa12.81□□□□□ -0.36
CDCA3-209ENST00000544610 DNAJC5Q9H3Z4 198 aa12.79□□□□□ -0.36
CDCA3-209ENST00000544610 CUX2O14529 1486 aa12.75□□□□□ -0.37
CDCA3-209ENST00000544610 ATAD2BQ9ULI0 1458 aa12.75□□□□□ -0.37
CDCA3-209ENST00000544610 SMARCA4P51532 1647 aa12.73□□□□□ -0.37
CDCA3-209ENST00000544610 HMGXB3Q12766 1538 aa12.72□□□□□ -0.37
CDCA3-209ENST00000544610 SMARCA2P51531 1590 aa12.72□□□□□ -0.37
CDCA3-209ENST00000544610 ERCC6Q03468 1493 aa12.71□□□□□ -0.38
CDCA3-209ENST00000544610 BAZ1AQ9NRL2 1556 aaPredicted RBP12.65□□□□□ -0.38
CDCA3-209ENST00000544610 PLPPR3Q6T4P5 718 aa12.65□□□□□ -0.38
CDCA3-209ENST00000544610 PEG3Q9GZU2 1588 aa12.63□□□□□ -0.39
CDCA3-209ENST00000544610 BAZ1BQ9UIG0 1483 aaKnown RBP12.62□□□□□ -0.39
CDCA3-209ENST00000544610 NESP48681 1621 aa12.62□□□□□ -0.39
CDCA3-209ENST00000544610 MROH2BQ7Z745 1585 aa12.54□□□□□ -0.4
CDCA3-209ENST00000544610 THOC2Q8NI27 1593 aaKnown RBP12.54□□□□□ -0.4
CDCA3-209ENST00000544610 LAMC3Q9Y6N6 1575 aa12.54□□□□□ -0.4
CDCA3-209ENST00000544610 PDS5BQ9NTI5 1447 aa12.45□□□□□ -0.42
CDCA3-209ENST00000544610 KIF21AQ7Z4S6 1674 aa12.45□□□□□ -0.42
CDCA3-209ENST00000544610 CADPSQ9ULU8 1353 aa12.41□□□□□ -0.42
CDCA3-209ENST00000544610 WIZO95785 1651 aa12.37□□□□□ -0.43
CDCA3-209ENST00000544610 MRC2Q9UBG0 1479 aa12.36□□□□□ -0.43
CDCA3-209ENST00000544610 WDR62O43379 1518 aa12.36□□□□□ -0.43
CDCA3-209ENST00000544610 DMRT2Q9Y5R5 561 aa12.33□□□□□ -0.44
CDCA3-209ENST00000544610 CEP164Q9UPV0 1460 aa12.29□□□□□ -0.44
CDCA3-209ENST00000544610 CFTRP13569 1480 aa12.27□□□□□ -0.45
CDCA3-209ENST00000544610 FANCD2Q9BXW9 1451 aa12.27□□□□□ -0.45
CDCA3-209ENST00000544610 RSF1Q96T23 1441 aaPredicted RBP12.25□□□□□ -0.45
CDCA3-209ENST00000544610 TOP2AP11388 1531 aaKnown RBP12.24□□□□□ -0.45
CDCA3-209ENST00000544610 URB2Q14146 1524 aaKnown RBP12.17□□□□□ -0.46
CDCA3-209ENST00000544610 TRIM41Q8WV44 630 aa12.16□□□□□ -0.46
CDCA3-209ENST00000544610 MAPK8IP2Q13387 824 aaPredicted RBP12.13□□□□□ -0.47
CDCA3-209ENST00000544610 PRDM2Q13029 1718 aa12.11□□□□□ -0.47
CDCA3-209ENST00000544610 OSCARQ8IYS5 282 aa12.09□□□□□ -0.47
CDCA3-209ENST00000544610 CCDC88BA6NC98 1476 aa12.08□□□□□ -0.48
CDCA3-209ENST00000544610 RNF39Q9H2S5 420 aa12.05□□□□□ -0.48
CDCA3-209ENST00000544610 IFT140Q96RY7 1462 aa12.05□□□□□ -0.48
CDCA3-209ENST00000544610 POTEHQ6S545 545 aa12.04□□□□□ -0.48
CDCA3-209ENST00000544610 ZNF608Q9ULD9 1512 aaPredicted RBP12.03□□□□□ -0.48
CDCA3-209ENST00000544610 TOPBP1Q92547 1522 aa12.02□□□□□ -0.48
CDCA3-209ENST00000544610 ABCC8Q09428 1581 aa12□□□□□ -0.49
CDCA3-209ENST00000544610 RIMBP3CA6NJZ7 1639 aa11.98□□□□□ -0.49
CDCA3-209ENST00000544610 RIMBP3BA6NNM3 1639 aa11.98□□□□□ -0.49
CDCA3-209ENST00000544610 RIMBP3Q9UFD9 1639 aa11.98□□□□□ -0.49
CDCA3-209ENST00000544610 EIF4G3O43432 1585 aaKnown RBP11.98□□□□□ -0.49
CDCA3-209ENST00000544610 DNMBPQ6XZF7 1577 aa11.98□□□□□ -0.49
CDCA3-209ENST00000544610 SCAF1Q9H7N4 1312 aaKnown RBP11.95□□□□□ -0.5
CDCA3-209ENST00000544610 ARHGEF11O15085 1522 aa11.95□□□□□ -0.5
CDCA3-209ENST00000544610 TARBP1Q13395 1621 aaKnown RBP11.93□□□□□ -0.5
CDCA3-209ENST00000544610 POLA1P09884 1462 aaPredicted RBP11.9□□□□□ -0.5
CDCA3-209ENST00000544610 AQRO60306 1485 aaKnown RBP eCLIP11.89□□□□□ -0.511e-6■■■□□ 15.1
CDCA3-209ENST00000544610 DCAF8L1A6NGE4 600 aa11.88□□□□□ -0.51
CDCA3-209ENST00000544610 CHD1O14646 1710 aa11.88□□□□□ -0.51
CDCA3-209ENST00000544610 C1QBPQ07021 282 aaKnown RBP11.87□□□□□ -0.51
CDCA3-209ENST00000544610 RAD54L2Q9Y4B4 1467 aa11.84□□□□□ -0.51
CDCA3-209ENST00000544610 WDR97A6NE52 1622 aa11.84□□□□□ -0.51
CDCA3-209ENST00000544610 SOGA1O94964 1423 aa11.82□□□□□ -0.52
CDCA3-209ENST00000544610 ARAP1Q96P48 1450 aa11.82□□□□□ -0.52
CDCA3-209ENST00000544610 FGD5Q6ZNL6 1462 aa11.81□□□□□ -0.52
CDCA3-209ENST00000544610 TDRD9Q8NDG6 1382 aaKnown RBP11.8□□□□□ -0.52
CDCA3-209ENST00000544610 CYB5RLQ6IPT4 315 aa11.8□□□□□ -0.52
CDCA3-209ENST00000544610 SNAPC4Q5SXM2 1469 aa11.79□□□□□ -0.52
CDCA3-209ENST00000544610 FBLN2P98095 1184 aa11.79□□□□□ -0.52
CDCA3-209ENST00000544610 CUX1P39880 1505 aa11.79□□□□□ -0.52
CDCA3-209ENST00000544610 CLASP1Q7Z460 1538 aa11.77□□□□□ -0.52
CDCA3-209ENST00000544610 MAGI1Q96QZ7 1491 aaPredicted RBP11.76□□□□□ -0.53
CDCA3-209ENST00000544610 GRIN2BQ13224 1484 aa11.75□□□□□ -0.53
CDCA3-209ENST00000544610 SYNJ1O43426 1573 aa11.75□□□□□ -0.53
CDCA3-209ENST00000544610 SYNJ2O15056 1496 aa11.73□□□□□ -0.53
CDCA3-209ENST00000544610 CHMP7Q8WUX9 453 aaPredicted RBP11.71□□□□□ -0.53
CDCA3-209ENST00000544610 PBRM1Q86U86 1689 aa11.69□□□□□ -0.54
CDCA3-209ENST00000544610 TRHP20396 242 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms