RNA–Protein interactions for RNA: ENST00000592012.5

MBD3-209, Transcript of methyl-CpG binding domain protein 3, humanhuman

TSL 5

Gene MBD3, Length 2,379 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3-209ENST00000592012 NISCHQ9Y2I1 1504 aa42.69■■■■■ 4.43
MBD3-209ENST00000592012 CCDC180Q9P1Z9 1646 aa36.7■■■■□ 3.46
MBD3-209ENST00000592012 ZCCHC6Q5VYS8 1495 aaKnown RBP36■■■■□ 3.35
MBD3-209ENST00000592012 SHROOM4Q9ULL8 1493 aa35.61■■■■□ 3.29
MBD3-209ENST00000592012 DCAF8L2P0C7V8 631 aa35.25■■■■□ 3.23
MBD3-209ENST00000592012 DCAF1Q9Y4B6 1507 aa35.19■■■■□ 3.22
MBD3-209ENST00000592012 SUPT5HO00267 1087 aaKnown RBP34.66■■■■□ 3.14
MBD3-209ENST00000592012 MYO15BQ96JP2 1530 aa34.45■■■■□ 3.11
MBD3-209ENST00000592012 ABCC9O60706 1549 aa34.25■■■■□ 3.07
MBD3-209ENST00000592012 NACADO15069 1562 aa34.05■■■■□ 3.04
MBD3-209ENST00000592012 SCRIBQ14160 1630 aa34.05■■■■□ 3.04
MBD3-209ENST00000592012 RB1CC1Q8TDY2 1594 aa33.58■■■□□ 2.97
MBD3-209ENST00000592012 CHIC1Q5VXU3 224 aa33.55■■■□□ 2.96
MBD3-209ENST00000592012 RSF1Q96T23 1441 aaPredicted RBP33.5■■■□□ 2.95
MBD3-209ENST00000592012 CECR2Q9BXF3 1484 aa33.23■■■□□ 2.91
MBD3-209ENST00000592012 MROH2BQ7Z745 1585 aa33.08■■■□□ 2.89
MBD3-209ENST00000592012 UNC13AQ9UPW8 1703 aa33.02■■■□□ 2.88
MBD3-209ENST00000592012 WIZO95785 1651 aa32.85■■■□□ 2.85
MBD3-209ENST00000592012 BAZ1AQ9NRL2 1556 aaPredicted RBP32.85■■■□□ 2.85
MBD3-209ENST00000592012 BICRAQ9NZM4 1560 aa32.65■■■□□ 2.82
MBD3-209ENST00000592012 SMARCA4P51532 1647 aa32.63■■■□□ 2.81
MBD3-209ENST00000592012 PABPN1Q86U42 306 aaKnown RBP eCLIP32.56■■■□□ 2.83e-6■■■□□ 17.7
MBD3-209ENST00000592012 TRIM41Q8WV44 630 aa32.46■■■□□ 2.79
MBD3-209ENST00000592012 TOP2AP11388 1531 aaKnown RBP32.42■■■□□ 2.78
MBD3-209ENST00000592012 LOC105371045A0A1W2PR82 267 aa32.41■■■□□ 2.78
MBD3-209ENST00000592012 EIF4G1Q04637 1599 aaKnown RBP32.22■■■□□ 2.75
MBD3-209ENST00000592012 CCDC88BA6NC98 1476 aa32.22■■■□□ 2.75
MBD3-209ENST00000592012 SMARCA2P51531 1590 aa32.19■■■□□ 2.74
MBD3-209ENST00000592012 PEG3Q9GZU2 1588 aa32.15■■■□□ 2.74
MBD3-209ENST00000592012 FAM9AQ8IZU1 332 aaPredicted RBP31.99■■■□□ 2.71
MBD3-209ENST00000592012 ATAD2BQ9ULI0 1458 aa31.94■■■□□ 2.7
MBD3-209ENST00000592012 ABCC8Q09428 1581 aa31.83■■■□□ 2.69
MBD3-209ENST00000592012 BAZ1BQ9UIG0 1483 aaKnown RBP31.78■■■□□ 2.68
MBD3-209ENST00000592012 PCGF6Q9BYE7 350 aa31.73■■■□□ 2.67
MBD3-209ENST00000592012 EHMT2Q96KQ7 1210 aa31.59■■■□□ 2.65
MBD3-209ENST00000592012 NCAPD3P42695 1498 aa31.5■■■□□ 2.63
MBD3-209ENST00000592012 WRNQ14191 1432 aaPredicted RBP eCLIP31.47■■■□□ 2.635e-6■■■■■ 46
MBD3-209ENST00000592012 HMGXB3Q12766 1538 aa31.45■■■□□ 2.62
MBD3-209ENST00000592012 SOGA1O94964 1423 aa31.43■■■□□ 2.62
MBD3-209ENST00000592012 TRIM26Q12899 539 aaPredicted RBP31.43■■■□□ 2.62
MBD3-209ENST00000592012 HRCP23327 699 aa31.39■■■□□ 2.62
MBD3-209ENST00000592012 EEA1Q15075 1411 aa31.34■■■□□ 2.61
MBD3-209ENST00000592012 SYNJ1O43426 1573 aa31.32■■■□□ 2.6
MBD3-209ENST00000592012 RUSC2Q8N2Y8 1516 aa31.29■■■□□ 2.6
MBD3-209ENST00000592012 CSRNP3Q8WYN3 585 aa31.25■■■□□ 2.59
MBD3-209ENST00000592012 TNIKQ9UKE5 1360 aa31.1■■■□□ 2.57
MBD3-209ENST00000592012 TOP2BQ02880 1626 aa31.07■■■□□ 2.56
MBD3-209ENST00000592012 CFTRP13569 1480 aa31.04■■■□□ 2.56
MBD3-209ENST00000592012 CEP162Q5TB80 1403 aa31.02■■■□□ 2.56
MBD3-209ENST00000592012 GOLGA3Q08378 1498 aa31■■■□□ 2.55
MBD3-209ENST00000592012 BIVM-ERCC5R4GMW8 1640 aa30.98■■■□□ 2.55
MBD3-209ENST00000592012 UBTFP17480 764 aaKnown RBP30.97■■■□□ 2.55
MBD3-209ENST00000592012 CC2D2AQ9P2K1 1620 aa30.94■■■□□ 2.54
MBD3-209ENST00000592012 CEP164Q9UPV0 1460 aa30.92■■■□□ 2.54
MBD3-209ENST00000592012 KIF21BO75037 1637 aa30.9■■■□□ 2.54
MBD3-209ENST00000592012 CUX1P39880 1505 aa30.85■■■□□ 2.53
MBD3-209ENST00000592012 PPARGC1BQ86YN6 1023 aaKnown RBP30.85■■■□□ 2.53
MBD3-209ENST00000592012 PRDM2Q13029 1718 aa30.8■■■□□ 2.52
MBD3-209ENST00000592012 CADPSQ9ULU8 1353 aa30.79■■■□□ 2.52
MBD3-209ENST00000592012 RAPGEF2Q9Y4G8 1499 aa30.72■■■□□ 2.51
MBD3-209ENST00000592012 PRXQ9BXM0 1461 aa30.59■■■□□ 2.49
MBD3-209ENST00000592012 CLIP1P30622 1438 aa30.59■■■□□ 2.49
MBD3-209ENST00000592012 KIF27Q86VH2 1401 aa30.58■■■□□ 2.49
MBD3-209ENST00000592012 ERICH3Q5RHP9 1530 aa30.55■■■□□ 2.48
MBD3-209ENST00000592012 ZEB1P37275 1124 aaPredicted RBP30.5■■■□□ 2.47
MBD3-209ENST00000592012 FANCD2Q9BXW9 1451 aa30.45■■■□□ 2.46
MBD3-209ENST00000592012 TTBK1Q5TCY1 1321 aaPredicted RBP30.43■■■□□ 2.46
MBD3-209ENST00000592012 VPS8Q8N3P4 1428 aa30.41■■■□□ 2.46
MBD3-209ENST00000592012 FGD5Q6ZNL6 1462 aa30.38■■■□□ 2.45
MBD3-209ENST00000592012 CUX2O14529 1486 aa30.36■■■□□ 2.45
MBD3-209ENST00000592012 NESP48681 1621 aa30.34■■■□□ 2.45
MBD3-209ENST00000592012 RANGAP1P46060 587 aaPredicted RBP30.34■■■□□ 2.45
MBD3-209ENST00000592012 IGF1RP08069 1367 aa30.31■■■□□ 2.44
MBD3-209ENST00000592012 DNAJC5BQ9UF47 199 aa30.26■■■□□ 2.43
MBD3-209ENST00000592012 DNMBPQ6XZF7 1577 aa30.25■■■□□ 2.43
MBD3-209ENST00000592012 LAMC3Q9Y6N6 1575 aa30.23■■■□□ 2.43
MBD3-209ENST00000592012 TOPBP1Q92547 1522 aa30.2■■■□□ 2.42
MBD3-209ENST00000592012 ARAP1Q96P48 1450 aa30.18■■■□□ 2.42
MBD3-209ENST00000592012 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.17■■■□□ 2.42
MBD3-209ENST00000592012 APLP2Q06481 763 aa30.17■■■□□ 2.42
MBD3-209ENST00000592012 CARMIL1Q5VZK9 1371 aa30.15■■■□□ 2.42
MBD3-209ENST00000592012 POLA1P09884 1462 aaPredicted RBP30.14■■■□□ 2.41
MBD3-209ENST00000592012 RAD54L2Q9Y4B4 1467 aa30.11■■■□□ 2.41
MBD3-209ENST00000592012 ABCA10Q8WWZ4 1543 aa30.09■■■□□ 2.41
MBD3-209ENST00000592012 CCER1Q8TC90 406 aaPredicted RBP30.08■■■□□ 2.41
MBD3-209ENST00000592012 ARHGAP35Q9NRY4 1499 aa30.05■■■□□ 2.4
MBD3-209ENST00000592012 URB2Q14146 1524 aaKnown RBP30.04■■■□□ 2.4
MBD3-209ENST00000592012 PDS5BQ9NTI5 1447 aa30.03■■■□□ 2.4
MBD3-209ENST00000592012 KIF21AQ7Z4S6 1674 aa29.88■■■□□ 2.37
MBD3-209ENST00000592012 WDR97A6NE52 1622 aa29.87■■■□□ 2.37
MBD3-209ENST00000592012 KANK4Q5T7N3 995 aaPredicted RBP29.87■■■□□ 2.37
MBD3-209ENST00000592012 HNRNPUL2Q1KMD3 747 aaKnown RBP29.84■■■□□ 2.37
MBD3-209ENST00000592012 CUL7Q14999 1698 aa29.83■■■□□ 2.37
MBD3-209ENST00000592012 TDRD9Q8NDG6 1382 aaKnown RBP29.77■■■□□ 2.36
MBD3-209ENST00000592012 ABCA5Q8WWZ7 1642 aa29.76■■■□□ 2.35
MBD3-209ENST00000592012 GAPVD1Q14C86 1478 aa29.72■■■□□ 2.35
MBD3-209ENST00000592012 MAP3K1Q13233 1512 aa29.67■■■□□ 2.34
MBD3-209ENST00000592012 TARBP1Q13395 1621 aaKnown RBP29.66■■■□□ 2.34
MBD3-209ENST00000592012 FHAD1B1AJZ9 1412 aa29.64■■■□□ 2.34
MBD3-209ENST00000592012 CTTNBP2Q8WZ74 1663 aa29.64■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms