Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 HNRNPA2B1-202ENST00000356674 1711 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.112e-11■■□□□ 12.5
U2AF1Q01081 SLC4A7-204ENST00000428005 1572 ntTSL 1 (best)30.19■■■□□ 2.424e-7■■□□□ 12.5
U2AF1Q01081 HECTD1-215ENST00000556474 1046 ntTSL 324.31■■□□□ 1.484e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-208ENST00000437266 3407 ntTSL 1 (best)20.01■□□□□ 0.794e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC18.27■□□□□ 0.514e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC18.05■□□□□ 0.484e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.474e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.474e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.454e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-209ENST00000438530 3825 ntTSL 1 (best)17.74■□□□□ 0.434e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC17.42■□□□□ 0.384e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-215ENST00000457377 3600 ntTSL 1 (best)16.72■□□□□ 0.274e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC15.27■□□□□ 0.044e-7■■□□□ 12.5
U2AF1Q01081 WDR59-222ENST00000570070 565 ntTSL 414.45□□□□□ -0.14e-7■■□□□ 12.5
U2AF1Q01081 SOX5-215ENST00000545921 2589 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.44e-7■■□□□ 12.5
U2AF1Q01081 SOX5-212ENST00000541536 2365 ntTSL 2 BASIC12.5□□□□□ -0.414e-7■■□□□ 12.5
U2AF1Q01081 SOX5-209ENST00000536911 855 ntTSL 312.26□□□□□ -0.454e-7■■□□□ 12.5
U2AF1Q01081 SOX5-206ENST00000535530 576 ntTSL 411.74□□□□□ -0.534e-7■■□□□ 12.5
U2AF1Q01081 SOX5-210ENST00000537393 2769 ntTSL 5 BASIC11.53□□□□□ -0.564e-7■■□□□ 12.5
U2AF1Q01081 SOX5-207ENST00000536629 570 ntTSL 410.5□□□□□ -0.734e-7■■□□□ 12.5
U2AF1Q01081 SOX5-202ENST00000381381 3991 ntTSL 5 BASIC10.36□□□□□ -0.754e-7■■□□□ 12.5
U2AF1Q01081 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC8.83□□□□□ -14e-7■■□□□ 12.5
U2AF1Q01081 SOX5-201ENST00000367206 1816 ntTSL 28.8□□□□□ -14e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-205ENST00000428179 3224 ntTSL 57.83□□□□□ -1.164e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC6.99□□□□□ -1.294e-7■■□□□ 12.5
U2AF1Q01081 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.82□□□□□ -1.324e-7■■□□□ 12.5
U2AF1Q01081 HECTD1-202ENST00000553616 570 ntTSL 26.19□□□□□ -1.424e-7■■□□□ 12.5
U2AF1Q01081 SOX5-214ENST00000542241 376 ntTSL 34.68□□□□□ -1.664e-7■■□□□ 12.5
U2AF1Q01081 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.934e-7■■□□□ 12.5
U2AF1Q01081 CASC3-206ENST00000579238 517 ntTSL 211.42□□□□□ -0.582e-9■■□□□ 12.5
U2AF1Q01081 DMTF1-230ENST00000580710 635 ntTSL 533.29■■■□□ 2.927e-12■■□□□ 12.5
U2AF1Q01081 SPG7-217ENST00000568151 544 ntTSL 430.49■■■□□ 2.471e-21■■□□□ 12.5
U2AF1Q01081 NECAB3-207ENST00000478237 827 ntTSL 230.11■■■□□ 2.412e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-212ENST00000485976 1016 ntTSL 530.11■■■□□ 2.412e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-211ENST00000485399 1373 ntTSL 229.01■■■□□ 2.232e-6■■□□□ 12.5
U2AF1Q01081 SPG7-214ENST00000566371 581 ntTSL 328.9■■■□□ 2.221e-21■■□□□ 12.5
U2AF1Q01081 NECAB3-222ENST00000607805 969 ntTSL 528.1■■■□□ 2.092e-6■■□□□ 12.5
U2AF1Q01081 AP1G1-220ENST00000570017 814 ntTSL 427.59■■■□□ 2.012e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-209ENST00000483813 1277 ntTSL 527.11■■□□□ 1.932e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC27.1■■□□□ 1.932e-6■■□□□ 12.5
U2AF1Q01081 CENPT-201ENST00000436104 1990 ntTSL 226.77■■□□□ 1.884e-9■■□□□ 12.5
U2AF1Q01081 NECAB3-213ENST00000488489 2142 ntTSL 226.73■■□□□ 1.872e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-217ENST00000606106 591 ntTSL 426.25■■□□□ 1.792e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-215ENST00000494174 859 ntTSL 526.25■■□□□ 1.792e-6■■□□□ 12.5
U2AF1Q01081 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC26.16■■□□□ 1.781e-21■■□□□ 12.5
U2AF1Q01081 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.72e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.672e-6■■□□□ 12.5
U2AF1Q01081 GPAT3-203ENST00000506766 570 ntTSL 325.33■■□□□ 1.652e-6■■□□□ 12.5
U2AF1Q01081 AP1G1-209ENST00000565161 574 ntTSL 425.14■■□□□ 1.622e-6■■□□□ 12.5
U2AF1Q01081 CENPT-207ENST00000562513 1669 ntTSL 525.08■■□□□ 1.614e-9■■□□□ 12.5
U2AF1Q01081 AP1G1-205ENST00000563104 882 ntTSL 425.02■■□□□ 1.62e-6■■□□□ 12.5
U2AF1Q01081 AP1G1-214ENST00000567583 606 ntTSL 225.02■■□□□ 1.62e-6■■□□□ 12.5
U2AF1Q01081 AP1G1-210ENST00000565412 619 ntTSL 324.98■■□□□ 1.592e-6■■□□□ 12.5
U2AF1Q01081 AP1G1-219ENST00000569975 561 ntTSL 424.73■■□□□ 1.552e-6■■□□□ 12.5
U2AF1Q01081 AP1G1-215ENST00000568327 1724 ntTSL 524.69■■□□□ 1.542e-6■■□□□ 12.5
U2AF1Q01081 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.524e-9■■□□□ 12.5
U2AF1Q01081 NECAB3-218ENST00000606525 2010 ntTSL 224.22■■□□□ 1.472e-6■■□□□ 12.5
U2AF1Q01081 CENPT-210ENST00000563885 1931 ntTSL 524.19■■□□□ 1.464e-9■■□□□ 12.5
U2AF1Q01081 GPAT3-205ENST00000509412 377 ntTSL 523.79■■□□□ 1.42e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-216ENST00000498353 597 ntTSL 323.56■■□□□ 1.362e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-208ENST00000480994 732 ntTSL 522.59■■□□□ 1.212e-6■■□□□ 12.5
U2AF1Q01081 AP1G1-206ENST00000563259 844 ntTSL 422.43■■□□□ 1.182e-6■■□□□ 12.5
U2AF1Q01081 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.182e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-204ENST00000463246 766 ntTSL 322.14■■□□□ 1.132e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-214ENST00000493590 625 ntTSL 522.1■■□□□ 1.132e-6■■□□□ 12.5
U2AF1Q01081 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.084e-9■■□□□ 12.5
U2AF1Q01081 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.052e-6■■□□□ 12.5
U2AF1Q01081 DMTF1-214ENST00000434534 581 ntTSL 421.37■■□□□ 1.017e-12■■□□□ 12.5
U2AF1Q01081 DMTF1-226ENST00000579592 579 ntTSL 421.28■■□□□ 17e-12■■□□□ 12.5
U2AF1Q01081 CENPT-223ENST00000566758 858 ntTSL 521.08■□□□□ 0.974e-9■■□□□ 12.5
U2AF1Q01081 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC21.04■□□□□ 0.964e-9■■□□□ 12.5
U2AF1Q01081 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.964e-9■■□□□ 12.5
U2AF1Q01081 DMTF1-237ENST00000584457 569 ntTSL 420.52■□□□□ 0.887e-12■■□□□ 12.5
U2AF1Q01081 GPAT3-207ENST00000514309 442 ntTSL 520.33■□□□□ 0.852e-6■■□□□ 12.5
U2AF1Q01081 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.834e-9■■□□□ 12.5
U2AF1Q01081 DLG1-207ENST00000419227 1771 ntTSL 220■□□□□ 0.792e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-203ENST00000439478 925 ntTSL 519.19■□□□□ 0.662e-6■■□□□ 12.5
U2AF1Q01081 NECAB3-219ENST00000606690 900 ntTSL 519.19■□□□□ 0.662e-6■■□□□ 12.5
U2AF1Q01081 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC19.03■□□□□ 0.642e-10■■□□□ 12.5
U2AF1Q01081 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.642e-6■■□□□ 12.5
U2AF1Q01081 CENPT-218ENST00000565157 2133 ntTSL 218.96■□□□□ 0.634e-9■■□□□ 12.5
U2AF1Q01081 SPG7-206ENST00000562775 1595 ntTSL 1 (best)18.64■□□□□ 0.581e-21■■□□□ 12.5
U2AF1Q01081 CENPT-211ENST00000564128 2673 ntTSL 218.15■□□□□ 0.54e-9■■□□□ 12.5
U2AF1Q01081 AP1G1-208ENST00000565009 2494 ntTSL 517.83■□□□□ 0.442e-6■■□□□ 12.5
U2AF1Q01081 AP1G1-217ENST00000569185 559 ntTSL 317.46■□□□□ 0.392e-6■■□□□ 12.5
U2AF1Q01081 DMTF1-201ENST00000331242 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.377e-12■■□□□ 12.5
U2AF1Q01081 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.37e-12■■□□□ 12.5
U2AF1Q01081 CENPT-233ENST00000569862 2957 ntTSL 216.53■□□□□ 0.244e-9■■□□□ 12.5
U2AF1Q01081 AP1G1-212ENST00000566161 989 ntTSL 415.99■□□□□ 0.152e-6■■□□□ 12.5
U2AF1Q01081 CENPT-227ENST00000568495 1098 ntTSL 515.82■□□□□ 0.124e-9■■□□□ 12.5
U2AF1Q01081 AP1G1-218ENST00000569748 4554 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.112e-6■■□□□ 12.5
U2AF1Q01081 DMTF1-238ENST00000584619 1645 ntTSL 515.43■□□□□ 0.067e-12■■□□□ 12.5
U2AF1Q01081 AP1G1-222ENST00000570297 604 ntTSL 415.21■□□□□ 0.032e-6■■□□□ 12.5
U2AF1Q01081 DLG1-205ENST00000392382 2690 ntTSL 5 BASIC14.38□□□□□ -0.112e-6■■□□□ 12.5
U2AF1Q01081 DLG1-215ENST00000448528 2977 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.132e-6■■□□□ 12.5
U2AF1Q01081 DLG1-201ENST00000346964 5034 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.232e-6■■□□□ 12.5
U2AF1Q01081 EXOC1-203ENST00000381295 3551 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.274e-9■■□□□ 12.5
U2AF1Q01081 AP1G1-202ENST00000393512 3593 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.362e-6■■□□□ 12.5
U2AF1Q01081 NPIPB4-211ENST00000539318 695 ntTSL 511.96□□□□□ -0.494e-9■■□□□ 12.5
U2AF1Q01081 AL450384.2-201ENST00000425669 1028 ntTSL 1 (best) BASIC11.93□□□□□ -0.52e-6■■□□□ 12.5
Retrieved 100 of 10,096 protein–RNA pairs in 62.3 ms