Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC138907.5-202ENST00000569484 235 ntBASIC17.72■□□□□ 0.43
SOX2P48431 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC17.72■□□□□ 0.43
SOX2P48431 AC110285.6-201ENST00000617652 491 ntBASIC17.72■□□□□ 0.43
SOX2P48431 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.72■□□□□ 0.43
SOX2P48431 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SOX2P48431 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX2P48431 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SOX2P48431 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SOX2P48431 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SOX2P48431 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
SOX2P48431 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX2P48431 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX2P48431 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX2P48431 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX2P48431 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX2P48431 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX2P48431 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX2P48431 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SOX2P48431 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX2P48431 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX2P48431 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.71■□□□□ 0.43
SOX2P48431 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX2P48431 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SOX2P48431 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX2P48431 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.71■□□□□ 0.43
SOX2P48431 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX2P48431 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX2P48431 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX2P48431 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.71■□□□□ 0.43
SOX2P48431 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.71■□□□□ 0.43
SOX2P48431 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX2P48431 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
SOX2P48431 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
SOX2P48431 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
SOX2P48431 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.7■□□□□ 0.42
SOX2P48431 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
SOX2P48431 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
SOX2P48431 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.7■□□□□ 0.42
SOX2P48431 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SOX2P48431 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SOX2P48431 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.7■□□□□ 0.42
SOX2P48431 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.7■□□□□ 0.42
SOX2P48431 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 PTPA-214ENST00000423100 988 ntTSL 2 BASIC17.7■□□□□ 0.42
SOX2P48431 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SOX2P48431 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.7■□□□□ 0.42
SOX2P48431 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SOX2P48431 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.7■□□□□ 0.42
SOX2P48431 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX2P48431 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SOX2P48431 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.69■□□□□ 0.42
SOX2P48431 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SOX2P48431 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
SOX2P48431 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.69■□□□□ 0.42
SOX2P48431 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.69■□□□□ 0.42
SOX2P48431 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.69■□□□□ 0.42
SOX2P48431 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.69■□□□□ 0.42
SOX2P48431 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC17.69■□□□□ 0.42
SOX2P48431 AL031432.3-201ENST00000607698 485 ntBASIC17.69■□□□□ 0.42
SOX2P48431 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.69■□□□□ 0.42
SOX2P48431 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SOX2P48431 AC020763.4-201ENST00000623414 4170 ntBASIC17.69■□□□□ 0.42
SOX2P48431 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SOX2P48431 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX2P48431 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SOX2P48431 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.69■□□□□ 0.42
SOX2P48431 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX2P48431 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX2P48431 DPP3P2-201ENST00000416030 1696 ntBASIC17.68■□□□□ 0.42
SOX2P48431 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.68■□□□□ 0.42
SOX2P48431 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.68■□□□□ 0.42
SOX2P48431 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX2P48431 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms