Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
COL9A1P20849 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL9A1P20849 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL9A1P20849 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.87■□□□□ 0.93
COL9A1P20849 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL9A1P20849 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL9A1P20849 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL9A1P20849 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL9A1P20849 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL9A1P20849 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.87■□□□□ 0.93
COL9A1P20849 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL9A1P20849 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.87■□□□□ 0.93
COL9A1P20849 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.87■□□□□ 0.93
COL9A1P20849 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.87■□□□□ 0.93
COL9A1P20849 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.87■□□□□ 0.93
COL9A1P20849 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.87■□□□□ 0.93
COL9A1P20849 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.87■□□□□ 0.93
COL9A1P20849 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
COL9A1P20849 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.87■□□□□ 0.93
COL9A1P20849 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL9A1P20849 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.87■□□□□ 0.93
COL9A1P20849 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL9A1P20849 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.87■□□□□ 0.93
COL9A1P20849 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL9A1P20849 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL9A1P20849 KRT8P10-201ENST00000450021 1447 ntBASIC20.87■□□□□ 0.93
COL9A1P20849 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.87■□□□□ 0.93
COL9A1P20849 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.87■□□□□ 0.93
COL9A1P20849 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
COL9A1P20849 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.86■□□□□ 0.93
COL9A1P20849 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
COL9A1P20849 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.86■□□□□ 0.93
COL9A1P20849 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.86■□□□□ 0.93
COL9A1P20849 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.86■□□□□ 0.93
COL9A1P20849 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.86■□□□□ 0.93
COL9A1P20849 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.86■□□□□ 0.93
COL9A1P20849 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL9A1P20849 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL9A1P20849 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
COL9A1P20849 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL9A1P20849 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL9A1P20849 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.85■□□□□ 0.93
COL9A1P20849 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
COL9A1P20849 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL9A1P20849 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.85■□□□□ 0.93
COL9A1P20849 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL9A1P20849 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL9A1P20849 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.85■□□□□ 0.93
COL9A1P20849 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.85■□□□□ 0.93
COL9A1P20849 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.85■□□□□ 0.93
COL9A1P20849 FAM86EP-206ENST00000510506 987 ntBASIC20.85■□□□□ 0.93
COL9A1P20849 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.85■□□□□ 0.93
COL9A1P20849 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.85■□□□□ 0.93
COL9A1P20849 AC073195.1-201ENST00000607241 877 ntBASIC20.85■□□□□ 0.93
COL9A1P20849 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL9A1P20849 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
COL9A1P20849 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.85■□□□□ 0.93
COL9A1P20849 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.84■□□□□ 0.93
COL9A1P20849 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.84■□□□□ 0.93
COL9A1P20849 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.84■□□□□ 0.93
COL9A1P20849 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL9A1P20849 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.84■□□□□ 0.93
COL9A1P20849 RN7SL510P-201ENST00000581311 263 ntBASIC20.84■□□□□ 0.93
COL9A1P20849 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL9A1P20849 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL9A1P20849 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
COL9A1P20849 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL9A1P20849 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL9A1P20849 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.84■□□□□ 0.93
COL9A1P20849 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL9A1P20849 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
COL9A1P20849 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.83■□□□□ 0.93
COL9A1P20849 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL9A1P20849 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL9A1P20849 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL9A1P20849 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL9A1P20849 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL9A1P20849 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL9A1P20849 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
COL9A1P20849 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.83■□□□□ 0.93
COL9A1P20849 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.83■□□□□ 0.93
COL9A1P20849 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL9A1P20849 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.83■□□□□ 0.93
COL9A1P20849 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.83■□□□□ 0.93
COL9A1P20849 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.83■□□□□ 0.92
COL9A1P20849 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
COL9A1P20849 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms