Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
HMGB3O15347 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
HMGB3O15347 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB3O15347 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB3O15347 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
HMGB3O15347 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB3O15347 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB3O15347 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB3O15347 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGB3O15347 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGB3O15347 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
HMGB3O15347 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGB3O15347 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HMGB3O15347 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
HMGB3O15347 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HMGB3O15347 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HMGB3O15347 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
HMGB3O15347 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGB3O15347 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGB3O15347 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGB3O15347 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
HMGB3O15347 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.21■□□□□ 0.19
HMGB3O15347 AP006587.3-201ENST00000525742 1516 ntBASIC16.21■□□□□ 0.19
HMGB3O15347 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
HMGB3O15347 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGB3O15347 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 LSM4-201ENST00000252816 986 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGB3O15347 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 PRTG-204ENST00000561292 833 ntTSL 3 BASIC16.21■□□□□ 0.19
HMGB3O15347 AC010525.1-201ENST00000585559 441 ntBASIC16.21■□□□□ 0.19
HMGB3O15347 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HMGB3O15347 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGB3O15347 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGB3O15347 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGB3O15347 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGB3O15347 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.18
HMGB3O15347 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
HMGB3O15347 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
HMGB3O15347 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.21■□□□□ 0.18
HMGB3O15347 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
HMGB3O15347 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC16.21■□□□□ 0.18
HMGB3O15347 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HMGB3O15347 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB3O15347 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
HMGB3O15347 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HMGB3O15347 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
HMGB3O15347 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.2■□□□□ 0.18
HMGB3O15347 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
HMGB3O15347 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 AC099791.2-201ENST00000605725 427 ntBASIC16.2■□□□□ 0.18
HMGB3O15347 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.2■□□□□ 0.18
HMGB3O15347 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.2■□□□□ 0.18
HMGB3O15347 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
HMGB3O15347 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HMGB3O15347 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HMGB3O15347 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HMGB3O15347 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms