Protein–RNA interactions for Protein: Q96MX3

ZNF48, Zinc finger protein 48, humanhuman

Predicted RBP Predictions only

Length 618 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF48Q96MX3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 Z99916.2-201ENST00000604037 246 ntBASIC16.45■□□□□ 0.22
ZNF48Q96MX3 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.45■□□□□ 0.22
ZNF48Q96MX3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.45■□□□□ 0.22
ZNF48Q96MX3 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 USP48-205ENST00000421625 2818 ntTSL 2 BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF48Q96MX3 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.43■□□□□ 0.22
ZNF48Q96MX3 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 MIR718-201ENST00000390190 70 ntBASIC16.43■□□□□ 0.22
ZNF48Q96MX3 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 SERP1-205ENST00000487153 657 ntTSL 4 BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 AL049796.1-201ENST00000565336 1766 ntBASIC16.43■□□□□ 0.22
ZNF48Q96MX3 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF48Q96MX3 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 AL356652.1-201ENST00000615962 565 ntBASIC16.42■□□□□ 0.22
ZNF48Q96MX3 AC006557.6-201ENST00000623071 864 ntBASIC16.42■□□□□ 0.22
ZNF48Q96MX3 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF48Q96MX3 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF48Q96MX3 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.41■□□□□ 0.22
ZNF48Q96MX3 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.41■□□□□ 0.22
ZNF48Q96MX3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.41■□□□□ 0.22
ZNF48Q96MX3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC16.41■□□□□ 0.22
ZNF48Q96MX3 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.41■□□□□ 0.22
ZNF48Q96MX3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF48Q96MX3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
ZNF48Q96MX3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.41■□□□□ 0.22
ZNF48Q96MX3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF48Q96MX3 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF48Q96MX3 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms