Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RB1P06400 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RB1P06400 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RB1P06400 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.5■■□□□ 1.03
RB1P06400 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RB1P06400 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RB1P06400 MIR1238-201ENST00000408483 83 ntBASIC21.5■■□□□ 1.03
RB1P06400 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.5■■□□□ 1.03
RB1P06400 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.5■■□□□ 1.03
RB1P06400 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.5■■□□□ 1.03
RB1P06400 NAPSB-206ENST00000562112 1266 ntBASIC21.5■■□□□ 1.03
RB1P06400 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RB1P06400 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.5■■□□□ 1.03
RB1P06400 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RB1P06400 AC124283.5-201ENST00000624661 1809 ntBASIC21.5■■□□□ 1.03
RB1P06400 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.5■■□□□ 1.03
RB1P06400 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RB1P06400 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
RB1P06400 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RB1P06400 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RB1P06400 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RB1P06400 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RB1P06400 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RB1P06400 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.49■■□□□ 1.03
RB1P06400 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.49■■□□□ 1.03
RB1P06400 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.49■■□□□ 1.03
RB1P06400 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RB1P06400 AC116562.2-201ENST00000507042 360 ntBASIC21.49■■□□□ 1.03
RB1P06400 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
RB1P06400 FITM1-202ENST00000559294 800 ntBASIC21.49■■□□□ 1.03
RB1P06400 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.49■■□□□ 1.03
RB1P06400 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.49■■□□□ 1.03
RB1P06400 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
RB1P06400 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
RB1P06400 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RB1P06400 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RB1P06400 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.48■■□□□ 1.03
RB1P06400 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.48■■□□□ 1.03
RB1P06400 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.48■■□□□ 1.03
RB1P06400 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
RB1P06400 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
RB1P06400 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.48■■□□□ 1.03
RB1P06400 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RB1P06400 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.48■■□□□ 1.03
RB1P06400 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
RB1P06400 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RB1P06400 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RB1P06400 KRT8P36-201ENST00000489121 1440 ntBASIC21.47■■□□□ 1.03
RB1P06400 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RB1P06400 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RB1P06400 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.47■■□□□ 1.03
RB1P06400 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RB1P06400 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RB1P06400 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RB1P06400 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
RB1P06400 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RB1P06400 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.47■■□□□ 1.03
RB1P06400 AL137013.1-201ENST00000432946 1228 ntBASIC21.47■■□□□ 1.03
RB1P06400 KSR1P1-201ENST00000446298 240 ntBASIC21.47■■□□□ 1.03
RB1P06400 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.47■■□□□ 1.03
RB1P06400 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.47■■□□□ 1.03
RB1P06400 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.47■■□□□ 1.03
RB1P06400 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.47■■□□□ 1.03
RB1P06400 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RB1P06400 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
RB1P06400 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
RB1P06400 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.46■■□□□ 1.03
RB1P06400 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
RB1P06400 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.46■■□□□ 1.03
RB1P06400 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.46■■□□□ 1.03
RB1P06400 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.46■■□□□ 1.03
RB1P06400 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.46■■□□□ 1.03
RB1P06400 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.46■■□□□ 1.03
RB1P06400 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
RB1P06400 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
RB1P06400 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
RB1P06400 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
RB1P06400 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
RB1P06400 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.45■■□□□ 1.03
RB1P06400 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.45■■□□□ 1.02
RB1P06400 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RB1P06400 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RB1P06400 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.45■■□□□ 1.02
RB1P06400 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RB1P06400 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.45■■□□□ 1.02
RB1P06400 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RB1P06400 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
RB1P06400 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RB1P06400 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms