Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDCA3Q99618 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDCA3Q99618 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDCA3Q99618 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDCA3Q99618 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDCA3Q99618 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.24■□□□□ 0.99
CDCA3Q99618 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDCA3Q99618 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDCA3Q99618 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDCA3Q99618 KRT8P9-201ENST00000558927 1449 ntBASIC21.23■□□□□ 0.99
CDCA3Q99618 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDCA3Q99618 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDCA3Q99618 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CDCA3Q99618 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CDCA3Q99618 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.23■□□□□ 0.99
CDCA3Q99618 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.23■□□□□ 0.99
CDCA3Q99618 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.23■□□□□ 0.99
CDCA3Q99618 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.23■□□□□ 0.99
CDCA3Q99618 AC116562.2-201ENST00000507042 360 ntBASIC21.23■□□□□ 0.99
CDCA3Q99618 FITM1-202ENST00000559294 800 ntBASIC21.23■□□□□ 0.99
CDCA3Q99618 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.23■□□□□ 0.99
CDCA3Q99618 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.23■□□□□ 0.99
CDCA3Q99618 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.23■□□□□ 0.99
CDCA3Q99618 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDCA3Q99618 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDCA3Q99618 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDCA3Q99618 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDCA3Q99618 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDCA3Q99618 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDCA3Q99618 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDCA3Q99618 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDCA3Q99618 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDCA3Q99618 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.22■□□□□ 0.99
CDCA3Q99618 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDCA3Q99618 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.22■□□□□ 0.99
CDCA3Q99618 KSR1P1-201ENST00000446298 240 ntBASIC21.22■□□□□ 0.99
CDCA3Q99618 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
CDCA3Q99618 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.22■□□□□ 0.99
CDCA3Q99618 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDCA3Q99618 KRT8P36-201ENST00000489121 1440 ntBASIC21.21■□□□□ 0.99
CDCA3Q99618 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDCA3Q99618 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDCA3Q99618 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDCA3Q99618 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.21■□□□□ 0.99
CDCA3Q99618 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
CDCA3Q99618 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.21■□□□□ 0.99
CDCA3Q99618 AL137013.1-201ENST00000432946 1228 ntBASIC21.21■□□□□ 0.99
CDCA3Q99618 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.21■□□□□ 0.99
CDCA3Q99618 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.21■□□□□ 0.99
CDCA3Q99618 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDCA3Q99618 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.21■□□□□ 0.99
CDCA3Q99618 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDCA3Q99618 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDCA3Q99618 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDCA3Q99618 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDCA3Q99618 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.98
CDCA3Q99618 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CDCA3Q99618 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.2■□□□□ 0.98
CDCA3Q99618 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.2■□□□□ 0.98
CDCA3Q99618 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.2■□□□□ 0.98
CDCA3Q99618 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CDCA3Q99618 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDCA3Q99618 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CDCA3Q99618 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDCA3Q99618 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDCA3Q99618 AC242852.2-201ENST00000615738 1807 ntBASIC21.2■□□□□ 0.98
CDCA3Q99618 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDCA3Q99618 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.2■□□□□ 0.98
CDCA3Q99618 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CDCA3Q99618 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDCA3Q99618 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDCA3Q99618 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDCA3Q99618 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDCA3Q99618 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDCA3Q99618 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CDCA3Q99618 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
CDCA3Q99618 TERF1P1-201ENST00000311003 1181 ntBASIC21.19■□□□□ 0.98
CDCA3Q99618 NIFKP9-201ENST00000419265 221 ntBASIC21.19■□□□□ 0.98
CDCA3Q99618 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.19■□□□□ 0.98
CDCA3Q99618 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDCA3Q99618 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.19■□□□□ 0.98
CDCA3Q99618 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.19■□□□□ 0.98
CDCA3Q99618 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.19■□□□□ 0.98
CDCA3Q99618 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDCA3Q99618 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDCA3Q99618 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDCA3Q99618 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDCA3Q99618 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.18■□□□□ 0.98
CDCA3Q99618 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
CDCA3Q99618 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDCA3Q99618 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CDCA3Q99618 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDCA3Q99618 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDCA3Q99618 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDCA3Q99618 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.18■□□□□ 0.98
CDCA3Q99618 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.18■□□□□ 0.98
CDCA3Q99618 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDCA3Q99618 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDCA3Q99618 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
CDCA3Q99618 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms