Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
FOXA3P55318 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
FOXA3P55318 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA3P55318 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA3P55318 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC15.18■□□□□ 0.02
FOXA3P55318 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
FOXA3P55318 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA3P55318 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
FOXA3P55318 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC15.18■□□□□ 0.02
FOXA3P55318 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
FOXA3P55318 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 AC005332.7-201ENST00000614046 2005 ntBASIC15.18■□□□□ 0.02
FOXA3P55318 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA3P55318 AC099791.2-201ENST00000605725 427 ntBASIC15.18■□□□□ 0.02
FOXA3P55318 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
FOXA3P55318 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
FOXA3P55318 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 LETM1P2-201ENST00000597330 2178 ntBASIC15.18■□□□□ 0.02
FOXA3P55318 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA3P55318 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
FOXA3P55318 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
FOXA3P55318 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
FOXA3P55318 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 NEFHP1-201ENST00000412845 2629 ntBASIC15.17■□□□□ 0.02
FOXA3P55318 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
FOXA3P55318 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA3P55318 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA3P55318 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
FOXA3P55318 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC15.17■□□□□ 0.02
FOXA3P55318 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 TSPY9P-201ENST00000440215 945 ntBASIC15.17■□□□□ 0.02
FOXA3P55318 TSPY11P-201ENST00000442607 1045 ntBASIC15.17■□□□□ 0.02
FOXA3P55318 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC15.17■□□□□ 0.02
FOXA3P55318 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC15.17■□□□□ 0.02
FOXA3P55318 MIR4787-201ENST00000607364 84 ntBASIC15.17■□□□□ 0.02
FOXA3P55318 AC012354.3-201ENST00000623734 483 ntBASIC15.17■□□□□ 0.02
FOXA3P55318 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC15.17■□□□□ 0.02
FOXA3P55318 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC15.17■□□□□ 0.02
FOXA3P55318 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA3P55318 LBX2-AS1-202ENST00000603175 2083 ntBASIC15.16■□□□□ 0.02
FOXA3P55318 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA3P55318 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
FOXA3P55318 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA3P55318 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
FOXA3P55318 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
FOXA3P55318 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
FOXA3P55318 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
FOXA3P55318 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC15.16■□□□□ 0.02
FOXA3P55318 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA3P55318 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
FOXA3P55318 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA3P55318 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 216.2 ms