Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 TAF1D-204ENST00000525928 1710 ntTSL 29.23□□□□□ -0.936e-13■■■□□ 14.8
SMNDC1O75940 TAF1D-210ENST00000529435 1011 ntTSL 58.27□□□□□ -1.096e-13■■■□□ 14.8
SMNDC1O75940 TAF1D-221ENST00000540232 483 ntTSL 37.23□□□□□ -1.256e-13■■■□□ 14.8
SMNDC1O75940 TAF1D-222ENST00000546088 1728 ntTSL 37.04□□□□□ -1.286e-13■■■□□ 14.8
SMNDC1O75940 TAF1D-215ENST00000530769 4358 ntTSL 26.41□□□□□ -1.386e-13■■■□□ 14.8
SMNDC1O75940 TAF1D-202ENST00000393259 547 ntTSL 36.29□□□□□ -1.46e-13■■■□□ 14.8
SMNDC1O75940 TCF25-207ENST00000562256 1879 ntTSL 1 (best)19.13■□□□□ 0.653e-7■■■□□ 14.8
SMNDC1O75940 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.68■□□□□ 0.423e-7■■■□□ 14.8
SMNDC1O75940 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.393e-7■■■□□ 14.8
SMNDC1O75940 TCF25-226ENST00000640279 2688 ntTSL 516.86■□□□□ 0.293e-7■■■□□ 14.8
SMNDC1O75940 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.11■□□□□ 0.812e-10■■■□□ 14.8
SMNDC1O75940 ASGR1-206ENST00000573596 2083 ntTSL 517.89■□□□□ 0.452e-10■■■□□ 14.8
SMNDC1O75940 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.78■□□□□ 0.122e-10■■■□□ 14.8
SMNDC1O75940 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.342e-10■■■□□ 14.8
SMNDC1O75940 ASGR1-203ENST00000570576 627 ntTSL 512.61□□□□□ -0.392e-10■■■□□ 14.8
SMNDC1O75940 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC12.27□□□□□ -0.452e-10■■■□□ 14.8
SMNDC1O75940 ASGR1-205ENST00000573083 855 ntTSL 38.96□□□□□ -0.982e-10■■■□□ 14.8
SMNDC1O75940 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.895e-6■■■□□ 14.8
SMNDC1O75940 E2F4-206ENST00000565849 639 ntTSL 324.18■■□□□ 1.465e-6■■■□□ 14.8
SMNDC1O75940 E2F4-213ENST00000569573 849 ntTSL 323.22■■□□□ 1.315e-6■■■□□ 14.8
SMNDC1O75940 ENOSF1-215ENST00000583771 436 ntTSL 520.69■□□□□ 0.95e-6■■■□□ 14.8
SMNDC1O75940 ENOSF1-218ENST00000584453 1230 ntTSL 520.66■□□□□ 0.95e-6■■■□□ 14.8
SMNDC1O75940 E2F4-210ENST00000568485 707 ntTSL 219.91■□□□□ 0.785e-6■■■□□ 14.8
SMNDC1O75940 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.625e-6■■■□□ 14.8
SMNDC1O75940 ID1-201ENST00000376105 1233 ntBASIC18.87■□□□□ 0.614e-11■■■□□ 14.8
SMNDC1O75940 E2F4-208ENST00000567007 2615 ntTSL 217.27■□□□□ 0.365e-6■■■□□ 14.8
SMNDC1O75940 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.354e-11■■■□□ 14.8
SMNDC1O75940 ENOSF1-206ENST00000578651 1177 ntTSL 216.21■□□□□ 0.195e-6■■■□□ 14.8
SMNDC1O75940 ENOSF1-211ENST00000581475 1745 ntTSL 1 (best)16.05■□□□□ 0.165e-6■■■□□ 14.8
SMNDC1O75940 E2F4-202ENST00000561904 897 ntTSL 316.01■□□□□ 0.155e-6■■■□□ 14.8
SMNDC1O75940 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.86□□□□□ -0.035e-6■■■□□ 14.8
SMNDC1O75940 E2F4-207ENST00000566368 438 ntTSL 313.95□□□□□ -0.185e-6■■■□□ 14.8
SMNDC1O75940 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.76□□□□□ -0.215e-6■■■□□ 14.8
SMNDC1O75940 ENOSF1-203ENST00000383578 4188 ntTSL 1 (best) BASIC12.95□□□□□ -0.345e-6■■■□□ 14.8
SMNDC1O75940 ENOSF1-207ENST00000579053 1313 ntTSL 511.93□□□□□ -0.55e-6■■■□□ 14.8
SMNDC1O75940 ENOSF1-222ENST00000585128 1296 ntTSL 511.89□□□□□ -0.515e-6■■■□□ 14.8
SMNDC1O75940 ENOSF1-208ENST00000580605 699 ntTSL 311.71□□□□□ -0.535e-6■■■□□ 14.8
SMNDC1O75940 E2F4-204ENST00000564718 688 ntTSL 311.33□□□□□ -0.65e-6■■■□□ 14.8
SMNDC1O75940 ENOSF1-221ENST00000585004 1501 ntTSL 210.38□□□□□ -0.755e-6■■■□□ 14.8
SMNDC1O75940 E2F4-212ENST00000568839 944 ntTSL 310.27□□□□□ -0.775e-6■■■□□ 14.8
SMNDC1O75940 E2F4-203ENST00000563238 736 ntTSL 29.97□□□□□ -0.815e-6■■■□□ 14.8
SMNDC1O75940 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC15.93■□□□□ 0.146e-8■■■□□ 14.8
SMNDC1O75940 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.16e-8■■■□□ 14.8
SMNDC1O75940 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC14.91□□□□□ -0.026e-8■■■□□ 14.8
SMNDC1O75940 ICA1-217ENST00000486677 322 ntTSL 519.79■□□□□ 0.761e-10■■■□□ 14.8
SMNDC1O75940 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.681e-10■■■□□ 14.8
SMNDC1O75940 YBX1-203ENST00000436427 1524 ntTSL 1 (best)19.27■□□□□ 0.681e-10■■■□□ 14.8
SMNDC1O75940 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.651e-10■■■□□ 14.8
SMNDC1O75940 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.591e-10■■■□□ 14.8
SMNDC1O75940 YBX1-202ENST00000332220 776 ntTSL 518.63■□□□□ 0.571e-10■■■□□ 14.8
SMNDC1O75940 YBX1-204ENST00000467957 770 ntTSL 216.67■□□□□ 0.261e-10■■■□□ 14.8
SMNDC1O75940 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.61■□□□□ 0.251e-10■■■□□ 14.8
SMNDC1O75940 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.161e-10■■■□□ 14.8
SMNDC1O75940 ICA1-204ENST00000396675 2133 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.411e-10■■■□□ 14.8
SMNDC1O75940 ICA1-213ENST00000455539 1956 ntTSL 1 (best)10.28□□□□□ -0.761e-10■■■□□ 14.8
SMNDC1O75940 ICA1-215ENST00000470696 800 ntTSL 510.25□□□□□ -0.771e-10■■■□□ 14.8
SMNDC1O75940 LIG1-211ENST00000596457 792 ntTSL 59.93□□□□□ -0.821e-10■■■□□ 14.8
SMNDC1O75940 LIG1-213ENST00000596672 792 ntTSL 39.38□□□□□ -0.911e-10■■■□□ 14.8
SMNDC1O75940 ICA1-209ENST00000422063 1539 ntTSL 1 (best) BASIC9.26□□□□□ -0.931e-10■■■□□ 14.8
SMNDC1O75940 ICA1-205ENST00000401396 1742 ntTSL 5 BASIC8.97□□□□□ -0.971e-10■■■□□ 14.8
SMNDC1O75940 ICA1-202ENST00000317367 946 ntTSL 26.83□□□□□ -1.321e-10■■■□□ 14.8
SMNDC1O75940 ICA1-203ENST00000339809 1415 ntTSL 1 (best)6.36□□□□□ -1.391e-10■■■□□ 14.8
SMNDC1O75940 GABRE-202ENST00000417300 619 ntTSL 210.69□□□□□ -0.75e-10■■■□□ 14.8
SMNDC1O75940 GABRE-203ENST00000441219 1324 ntTSL 28.06□□□□□ -1.125e-10■■■□□ 14.8
SMNDC1O75940 GABRE-205ENST00000465405 706 ntTSL 1 (best)7.91□□□□□ -1.145e-10■■■□□ 14.8
SMNDC1O75940 GABRE-211ENST00000491339 2072 ntTSL 27.82□□□□□ -1.165e-10■■■□□ 14.8
SMNDC1O75940 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.333e-13■■■□□ 14.7
SMNDC1O75940 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.023e-7■■■□□ 14.7
SMNDC1O75940 APOE-202ENST00000425718 923 ntTSL 1 (best)21.37■■□□□ 1.013e-7■■■□□ 14.7
SMNDC1O75940 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.833e-7■■■□□ 14.7
SMNDC1O75940 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.76■□□□□ 0.753e-7■■■□□ 14.7
SMNDC1O75940 APOE-204ENST00000446996 737 ntTSL 219.53■□□□□ 0.723e-7■■■□□ 14.7
SMNDC1O75940 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.633e-7■■■□□ 14.7
SMNDC1O75940 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.92■□□□□ 0.623e-7■■■□□ 14.7
SMNDC1O75940 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.563e-7■■■□□ 14.7
SMNDC1O75940 APOE-203ENST00000434152 864 ntTSL 218.04■□□□□ 0.483e-7■■■□□ 14.7
SMNDC1O75940 STK11-207ENST00000589152 3365 ntTSL 217.18■□□□□ 0.343e-7■■■□□ 14.7
SMNDC1O75940 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.8■□□□□ 0.283e-7■■■□□ 14.7
SMNDC1O75940 AP006621.5-201ENST00000623846 1139 nt15.67■□□□□ 0.13e-7■■■□□ 14.7
SMNDC1O75940 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.66■□□□□ 0.13e-7■■■□□ 14.7
SMNDC1O75940 POLG-224ENST00000637711 142 ntTSL 515.26■□□□□ 0.033e-7■■■□□ 14.7
SMNDC1O75940 STK11-202ENST00000585465 3554 ntTSL 514.69□□□□□ -0.063e-7■■■□□ 14.7
SMNDC1O75940 GBGT1-205ENST00000470431 2870 ntTSL 1 (best)14.41□□□□□ -0.13e-7■■■□□ 14.7
SMNDC1O75940 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.17□□□□□ -0.143e-13■■■□□ 14.7
SMNDC1O75940 APOE-205ENST00000485628 771 ntTSL 1 (best)13.88□□□□□ -0.193e-7■■■□□ 14.7
SMNDC1O75940 PSRC1-207ENST00000418914 1040 ntTSL 1 (best)13.84□□□□□ -0.195e-7■■■□□ 14.7
SMNDC1O75940 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC13.73□□□□□ -0.213e-7■■■□□ 14.7
SMNDC1O75940 GBGT1-206ENST00000472281 2948 ntTSL 213.63□□□□□ -0.233e-7■■■□□ 14.7
SMNDC1O75940 UBR4-207ENST00000425413 2954 ntTSL 211.61□□□□□ -0.553e-7■■■□□ 14.7
SMNDC1O75940 AP006621.5-202ENST00000623692 636 ntBASIC11.17□□□□□ -0.623e-7■■■□□ 14.7
SMNDC1O75940 SS18L1-203ENST00000450482 781 ntTSL 510.5□□□□□ -0.733e-7■■■□□ 14.7
SMNDC1O75940 SS18L1-201ENST00000331758 4493 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.93e-7■■■□□ 14.7
SMNDC1O75940 UBR4-209ENST00000465036 392 ntTSL 29.27□□□□□ -0.933e-7■■■□□ 14.7
SMNDC1O75940 NCAPD2-211ENST00000542472 444 ntTSL 36.7□□□□□ -1.343e-7■■■□□ 14.7
SMNDC1O75940 POLG-219ENST00000636937 100 ntTSL 52.81□□□□□ -1.963e-7■■■□□ 14.7
SMNDC1O75940 PPOX-212ENST00000495483 2471 ntTSL 221.19■□□□□ 0.981e-10■■■□□ 14.7
SMNDC1O75940 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.361e-10■■■□□ 14.7
SMNDC1O75940 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.18■□□□□ 0.341e-10■■■□□ 14.7
SMNDC1O75940 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.2■□□□□ 0.181e-10■■■□□ 14.7
SMNDC1O75940 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.041e-10■■■□□ 14.7
Retrieved 100 of 11,362 protein–RNA pairs in 188.7 ms