RNA–Protein interactions for RNA: ENST00000465036.1

UBR4-209, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 392 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-209ENST00000465036 AEBP2Q6ZN18 517 aaPredicted RBP31.79■■■□□ 2.68
UBR4-209ENST00000465036 CHIC1Q5VXU3 224 aa30.39■■■□□ 2.46
UBR4-209ENST00000465036 SENP3Q9H4L4 574 aaPredicted RBP27.18■■□□□ 1.94
UBR4-209ENST00000465036 PHF23Q9BUL5 403 aaPredicted RBP26.8■■□□□ 1.88
UBR4-209ENST00000465036 FOXD1Q16676 465 aa25.26■■□□□ 1.63
UBR4-209ENST00000465036 PLPPR3Q6T4P5 718 aa24.36■■□□□ 1.49
UBR4-209ENST00000465036 PPP6R1Q9UPN7 881 aa23.69■■□□□ 1.38
UBR4-209ENST00000465036 MSH5O43196 834 aa23.66■■□□□ 1.38
UBR4-209ENST00000465036 PIAS4Q8N2W9 510 aaPredicted RBP23.61■■□□□ 1.37
UBR4-209ENST00000465036 ADRA2BP18089 450 aa23.6■■□□□ 1.37
UBR4-209ENST00000465036 POTEDQ86YR6 584 aa22.77■■□□□ 1.24
UBR4-209ENST00000465036 SCAF1Q9H7N4 1312 aaKnown RBP21.73■■□□□ 1.07
UBR4-209ENST00000465036 MAPK8IP2Q13387 824 aaPredicted RBP21.62■■□□□ 1.05
UBR4-209ENST00000465036 DMRT2Q9Y5R5 561 aa21.57■■□□□ 1.04
UBR4-209ENST00000465036 PPP4R3CPQ6ZMV5 832 aa21.33■■□□□ 1.01
UBR4-209ENST00000465036 CNKSR2Q8WXI2 1034 aa20.94■□□□□ 0.94
UBR4-209ENST00000465036 HOXD11P31277 338 aaPredicted RBP20.87■□□□□ 0.93
UBR4-209ENST00000465036 RNF216Q9NWF9 866 aaPredicted RBP20.74■□□□□ 0.91
UBR4-209ENST00000465036 NCBP3Q53F19 620 aaKnown RBP20.61■□□□□ 0.89
UBR4-209ENST00000465036 DCAF8L1A6NGE4 600 aa20.52■□□□□ 0.88
UBR4-209ENST00000465036 NPM3O75607 178 aaKnown RBP20.25■□□□□ 0.83
UBR4-209ENST00000465036 DNAJC5BQ9UF47 199 aa20.24■□□□□ 0.83
UBR4-209ENST00000465036 RNF39Q9H2S5 420 aa20.18■□□□□ 0.82
UBR4-209ENST00000465036 CACNB1Q02641 598 aaPredicted RBP20.13■□□□□ 0.81
UBR4-209ENST00000465036 KCNA4P22459 653 aa19.94■□□□□ 0.78
UBR4-209ENST00000465036 C1QBPQ07021 282 aaKnown RBP19.93■□□□□ 0.78
UBR4-209ENST00000465036 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.78■□□□□ 0.76
UBR4-209ENST00000465036 U3KPZ7 1027 aaPredicted RBP19.4■□□□□ 0.7
UBR4-209ENST00000465036 SLC4A2P04920 1241 aa19.31■□□□□ 0.68
UBR4-209ENST00000465036 SPINK5Q9NQ38 1064 aaPredicted RBP19.03■□□□□ 0.64
UBR4-209ENST00000465036 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19■□□□□ 0.63
UBR4-209ENST00000465036 HNRNPUL2Q1KMD3 747 aaKnown RBP19■□□□□ 0.63
UBR4-209ENST00000465036 CAPN15O75808 1086 aa18.99■□□□□ 0.63
UBR4-209ENST00000465036 APLP2Q06481 763 aa18.98■□□□□ 0.63
UBR4-209ENST00000465036 DSG3P32926 999 aa18.92■□□□□ 0.62
UBR4-209ENST00000465036 SLC4A1APQ9BWU0 796 aaKnown RBP18.88■□□□□ 0.61
UBR4-209ENST00000465036 SAMD1Q6SPF0 538 aaPredicted RBP18.87■□□□□ 0.61
UBR4-209ENST00000465036 ZNF219Q9P2Y4 722 aaPredicted RBP18.79■□□□□ 0.6
UBR4-209ENST00000465036 MYCNP04198 464 aaPredicted RBP18.77■□□□□ 0.6
UBR4-209ENST00000465036 TRHP20396 242 aaPredicted RBP18.71■□□□□ 0.59
UBR4-209ENST00000465036 FOXD4L1Q9NU39 408 aa18.63■□□□□ 0.57
UBR4-209ENST00000465036 ABCB7O75027 752 aa18.52■□□□□ 0.56
UBR4-209ENST00000465036 ZBTB22O15209 634 aa18.33■□□□□ 0.52
UBR4-209ENST00000465036 POLA2Q14181 598 aa18.29■□□□□ 0.52
UBR4-209ENST00000465036 ATF5Q9Y2D1 282 aaPredicted RBP18.23■□□□□ 0.51
UBR4-209ENST00000465036 ATXN8OSP0DMR3 200 aa18.14■□□□□ 0.49
UBR4-209ENST00000465036 RBM42Q9BTD8 480 aaKnown RBP18.11■□□□□ 0.49
UBR4-209ENST00000465036 ZBTB12Q9Y330 459 aaPredicted RBP18.03■□□□□ 0.48
UBR4-209ENST00000465036 POTEHQ6S545 545 aa17.88■□□□□ 0.45
UBR4-209ENST00000465036 AKT1S1Q96B36 256 aa17.71■□□□□ 0.43
UBR4-209ENST00000465036 OSCARQ8IYS5 282 aa17.66■□□□□ 0.42
UBR4-209ENST00000465036 CSRNP3Q8WYN3 585 aa17.64■□□□□ 0.41
UBR4-209ENST00000465036 CHRDL2Q6WN34 429 aa17.59■□□□□ 0.41
UBR4-209ENST00000465036 FBLN2P98095 1184 aa17.58■□□□□ 0.4
UBR4-209ENST00000465036 REM2Q8IYK8 340 aaPredicted RBP17.49■□□□□ 0.39
UBR4-209ENST00000465036 SPDYE2BA6NHP3 402 aa17.45■□□□□ 0.38
UBR4-209ENST00000465036 SPDYE6P0CI01 402 aa17.45■□□□□ 0.38
UBR4-209ENST00000465036 SPDYE2Q495Y8 402 aa17.45■□□□□ 0.38
UBR4-209ENST00000465036 MKRN4PQ13434 485 aaPredicted RBP17.44■□□□□ 0.38
UBR4-209ENST00000465036 EHMT2Q96KQ7 1210 aa17.37■□□□□ 0.37
UBR4-209ENST00000465036 PITPNM1O00562 1244 aa17.28■□□□□ 0.36
UBR4-209ENST00000465036 SSUH2Q9Y2M2 353 aa17.24■□□□□ 0.35
UBR4-209ENST00000465036 ZNF692Q9BU19 519 aaPredicted RBP17.21■□□□□ 0.35
UBR4-209ENST00000465036 PIP4P2Q8N4L2 257 aa17.18■□□□□ 0.34
UBR4-209ENST00000465036 FXR2P51116 673 aaKnown RBP eCLIP17.16■□□□□ 0.343e-16■■■■■ 28.5
UBR4-209ENST00000465036 SPDYE1Q8NFV5 336 aaPredicted RBP17.1■□□□□ 0.33
UBR4-209ENST00000465036 CLEC11AQ9Y240 323 aa16.96■□□□□ 0.31
UBR4-209ENST00000465036 PABPN1Q86U42 306 aaKnown RBP eCLIP16.94■□□□□ 0.3
UBR4-209ENST00000465036 SP7Q8TDD2 431 aaPredicted RBP16.84■□□□□ 0.29
UBR4-209ENST00000465036 PRKAR2AP13861 404 aaKnown RBP16.83■□□□□ 0.28
UBR4-209ENST00000465036 HAX1O00165 279 aa16.81■□□□□ 0.28
UBR4-209ENST00000465036 PRR29P0C7W0 189 aa16.76■□□□□ 0.27
UBR4-209ENST00000465036 SPDYE4A6NLX3 237 aa16.69■□□□□ 0.26
UBR4-209ENST00000465036 CHADLQ6NUI6 762 aa16.61■□□□□ 0.25
UBR4-209ENST00000465036 STAG3Q9UJ98 1225 aa16.61■□□□□ 0.25
UBR4-209ENST00000465036 C19orf67A6NJJ6 358 aa16.6■□□□□ 0.25
UBR4-209ENST00000465036 EVX2Q03828 476 aa16.6■□□□□ 0.25
UBR4-209ENST00000465036 FARP1Q9Y4F1 1045 aaPredicted RBP16.47■□□□□ 0.23
UBR4-209ENST00000465036 PROM2Q8N271 834 aa16.41■□□□□ 0.22
UBR4-209ENST00000465036 CREBZFQ9NS37 354 aa16.38■□□□□ 0.21
UBR4-209ENST00000465036 CD44P16070 742 aaKnown RBP16.3■□□□□ 0.2
UBR4-209ENST00000465036 GABBR2O75899 941 aa16.28■□□□□ 0.2
UBR4-209ENST00000465036 CLCN6P51797 869 aa16.25■□□□□ 0.19
UBR4-209ENST00000465036 MNX1P50219 401 aaPredicted RBP16.15■□□□□ 0.18
UBR4-209ENST00000465036 NPM1P06748 294 aaKnown RBP eCLIP16.13■□□□□ 0.17
UBR4-209ENST00000465036 ZNF579Q8NAF0 562 aaKnown RBP16.12■□□□□ 0.17
UBR4-209ENST00000465036 ZRANB1Q9UGI0 708 aa16.08■□□□□ 0.16
UBR4-209ENST00000465036 PAK3O75914 559 aaPredicted RBP16.03■□□□□ 0.16
UBR4-209ENST00000465036 FKBP8Q14318 412 aa15.95■□□□□ 0.14
UBR4-209ENST00000465036 POTEIP0CG38 1075 aa15.93■□□□□ 0.14
UBR4-209ENST00000465036 PLEKHG5O94827 1062 aa15.92■□□□□ 0.14
UBR4-209ENST00000465036 MIER1Q8N108 512 aa15.89■□□□□ 0.13
UBR4-209ENST00000465036 DCBLD2Q96PD2 775 aa15.86■□□□□ 0.13
UBR4-209ENST00000465036 PHF12Q96QT6 1004 aa15.84■□□□□ 0.13
UBR4-209ENST00000465036 GALR2O43603 387 aaPredicted RBP15.83■□□□□ 0.12
UBR4-209ENST00000465036 LHX8Q68G74 356 aa15.79■□□□□ 0.12
UBR4-209ENST00000465036 PLCD3Q8N3E9 789 aa15.77■□□□□ 0.12
UBR4-209ENST00000465036 ZBTB47Q9UFB7 747 aaPredicted RBP15.75■□□□□ 0.11
UBR4-209ENST00000465036 CCDC61Q9Y6R9 512 aa15.75■□□□□ 0.11
UBR4-209ENST00000465036 TSPYL2Q9H2G4 693 aaPredicted RBP15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms