RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 NISCHQ9Y2I1 1504 aa24.43■■□□□ 1.5
UBR4-207ENST00000425413 SHROOM4Q9ULL8 1493 aa20.98■□□□□ 0.95
UBR4-207ENST00000425413 DCAF8L2P0C7V8 631 aa20.74■□□□□ 0.91
UBR4-207ENST00000425413 CCDC180Q9P1Z9 1646 aa20.73■□□□□ 0.91
UBR4-207ENST00000425413 ZCCHC6Q5VYS8 1495 aaKnown RBP20.59■□□□□ 0.89
UBR4-207ENST00000425413 SUPT5HO00267 1087 aaKnown RBP20.46■□□□□ 0.87
UBR4-207ENST00000425413 DCAF1Q9Y4B6 1507 aa19.9■□□□□ 0.78
UBR4-207ENST00000425413 ABCC9O60706 1549 aa19.75■□□□□ 0.75
UBR4-207ENST00000425413 SCRIBQ14160 1630 aa19.63■□□□□ 0.73
UBR4-207ENST00000425413 CHIC1Q5VXU3 224 aa19.62■□□□□ 0.73
UBR4-207ENST00000425413 MYO15BQ96JP2 1530 aa19.45■□□□□ 0.7
UBR4-207ENST00000425413 NACADO15069 1562 aa19.31■□□□□ 0.68
UBR4-207ENST00000425413 RSF1Q96T23 1441 aaPredicted RBP19.3■□□□□ 0.68
UBR4-207ENST00000425413 CECR2Q9BXF3 1484 aa19.19■□□□□ 0.66
UBR4-207ENST00000425413 LOC105371045A0A1W2PR82 267 aa19.15■□□□□ 0.66
UBR4-207ENST00000425413 RB1CC1Q8TDY2 1594 aa19.09■□□□□ 0.65
UBR4-207ENST00000425413 MROH2BQ7Z745 1585 aa19.05■□□□□ 0.64
UBR4-207ENST00000425413 TRIM41Q8WV44 630 aa18.99■□□□□ 0.63
UBR4-207ENST00000425413 FAM9AQ8IZU1 332 aaPredicted RBP18.97■□□□□ 0.63
UBR4-207ENST00000425413 PABPN1Q86U42 306 aaKnown RBP eCLIP18.95■□□□□ 0.62
UBR4-207ENST00000425413 EHMT2Q96KQ7 1210 aa18.93■□□□□ 0.62
UBR4-207ENST00000425413 WIZO95785 1651 aa18.91■□□□□ 0.62
UBR4-207ENST00000425413 PCGF6Q9BYE7 350 aa18.87■□□□□ 0.61
UBR4-207ENST00000425413 BAZ1AQ9NRL2 1556 aaPredicted RBP18.77■□□□□ 0.59
UBR4-207ENST00000425413 UNC13AQ9UPW8 1703 aa18.73■□□□□ 0.59
UBR4-207ENST00000425413 SMARCA4P51532 1647 aa18.64■□□□□ 0.57
UBR4-207ENST00000425413 BICRAQ9NZM4 1560 aa18.58■□□□□ 0.56
UBR4-207ENST00000425413 CCDC88BA6NC98 1476 aa18.55■□□□□ 0.56
UBR4-207ENST00000425413 HRCP23327 699 aa18.55■□□□□ 0.56
UBR4-207ENST00000425413 TOP2AP11388 1531 aaKnown RBP18.55■□□□□ 0.56
UBR4-207ENST00000425413 ABCC8Q09428 1581 aa18.47■□□□□ 0.55
UBR4-207ENST00000425413 SMARCA2P51531 1590 aa18.46■□□□□ 0.55
UBR4-207ENST00000425413 TRIM26Q12899 539 aaPredicted RBP18.43■□□□□ 0.54
UBR4-207ENST00000425413 PPARGC1BQ86YN6 1023 aaKnown RBP18.42■□□□□ 0.54
UBR4-207ENST00000425413 EIF4G1Q04637 1599 aaKnown RBP18.41■□□□□ 0.54
UBR4-207ENST00000425413 ATAD2BQ9ULI0 1458 aa18.28■□□□□ 0.52
UBR4-207ENST00000425413 SOGA1O94964 1423 aa18.28■□□□□ 0.52
UBR4-207ENST00000425413 BAZ1BQ9UIG0 1483 aaKnown RBP18.25■□□□□ 0.51
UBR4-207ENST00000425413 TTBK1Q5TCY1 1321 aaPredicted RBP18.23■□□□□ 0.51
UBR4-207ENST00000425413 RUSC2Q8N2Y8 1516 aa18.2■□□□□ 0.5
UBR4-207ENST00000425413 PEG3Q9GZU2 1588 aa18.19■□□□□ 0.5
UBR4-207ENST00000425413 UBTFP17480 764 aaKnown RBP18.18■□□□□ 0.5
UBR4-207ENST00000425413 WRNQ14191 1432 aaPredicted RBP eCLIP18.16■□□□□ 0.5
UBR4-207ENST00000425413 CSRNP3Q8WYN3 585 aa18.15■□□□□ 0.5
UBR4-207ENST00000425413 RANGAP1P46060 587 aaPredicted RBP18.04■□□□□ 0.48
UBR4-207ENST00000425413 SYNJ1O43426 1573 aa18.04■□□□□ 0.48
UBR4-207ENST00000425413 CEP162Q5TB80 1403 aa18.03■□□□□ 0.48
UBR4-207ENST00000425413 EEA1Q15075 1411 aa17.97■□□□□ 0.47
UBR4-207ENST00000425413 TNIKQ9UKE5 1360 aa17.97■□□□□ 0.47
UBR4-207ENST00000425413 NCAPD3P42695 1498 aa17.92■□□□□ 0.46
UBR4-207ENST00000425413 GOLGA3Q08378 1498 aa17.91■□□□□ 0.46
UBR4-207ENST00000425413 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.9■□□□□ 0.46
UBR4-207ENST00000425413 HMGXB3Q12766 1538 aa17.84■□□□□ 0.45
UBR4-207ENST00000425413 ZEB1P37275 1124 aaPredicted RBP17.83■□□□□ 0.45
UBR4-207ENST00000425413 CEP164Q9UPV0 1460 aa17.83■□□□□ 0.44
UBR4-207ENST00000425413 RAPGEF2Q9Y4G8 1499 aa17.81■□□□□ 0.44
UBR4-207ENST00000425413 CCER1Q8TC90 406 aaPredicted RBP17.8■□□□□ 0.44
UBR4-207ENST00000425413 TOP2BQ02880 1626 aa17.77■□□□□ 0.43
UBR4-207ENST00000425413 CLIP1P30622 1438 aa17.77■□□□□ 0.43
UBR4-207ENST00000425413 CUX1P39880 1505 aa17.73■□□□□ 0.43
UBR4-207ENST00000425413 CFTRP13569 1480 aa17.73■□□□□ 0.43
UBR4-207ENST00000425413 KIF21BO75037 1637 aa17.71■□□□□ 0.43
UBR4-207ENST00000425413 APLP2Q06481 763 aa17.67■□□□□ 0.42
UBR4-207ENST00000425413 HNRNPUL2Q1KMD3 747 aaKnown RBP17.66■□□□□ 0.42
UBR4-207ENST00000425413 BIVM-ERCC5R4GMW8 1640 aa17.65■□□□□ 0.42
UBR4-207ENST00000425413 CC2D2AQ9P2K1 1620 aa17.65■□□□□ 0.42
UBR4-207ENST00000425413 CADPSQ9ULU8 1353 aa17.64■□□□□ 0.41
UBR4-207ENST00000425413 KIF27Q86VH2 1401 aa17.62■□□□□ 0.41
UBR4-207ENST00000425413 VPS8Q8N3P4 1428 aa17.59■□□□□ 0.41
UBR4-207ENST00000425413 PRXQ9BXM0 1461 aa17.57■□□□□ 0.4
UBR4-207ENST00000425413 CUX2O14529 1486 aa17.55■□□□□ 0.4
UBR4-207ENST00000425413 DNAJC5BQ9UF47 199 aa17.52■□□□□ 0.4
UBR4-207ENST00000425413 NESP48681 1621 aa17.5■□□□□ 0.39
UBR4-207ENST00000425413 FGD5Q6ZNL6 1462 aa17.49■□□□□ 0.39
UBR4-207ENST00000425413 FANCD2Q9BXW9 1451 aa17.47■□□□□ 0.39
UBR4-207ENST00000425413 ERICH3Q5RHP9 1530 aa17.47■□□□□ 0.39
UBR4-207ENST00000425413 KANK4Q5T7N3 995 aaPredicted RBP17.47■□□□□ 0.39
UBR4-207ENST00000425413 IGF1RP08069 1367 aa17.47■□□□□ 0.39
UBR4-207ENST00000425413 ARAP1Q96P48 1450 aa17.45■□□□□ 0.38
UBR4-207ENST00000425413 P3H3Q8IVL6 736 aa17.42■□□□□ 0.38
UBR4-207ENST00000425413 CARMIL1Q5VZK9 1371 aa17.41■□□□□ 0.38
UBR4-207ENST00000425413 RAD54L2Q9Y4B4 1467 aa17.4■□□□□ 0.38
UBR4-207ENST00000425413 PRDM2Q13029 1718 aa17.37■□□□□ 0.37
UBR4-207ENST00000425413 ATP1B4Q9UN42 357 aaPredicted RBP17.37■□□□□ 0.37
UBR4-207ENST00000425413 ARHGAP35Q9NRY4 1499 aa17.36■□□□□ 0.37
UBR4-207ENST00000425413 ITGAEP38570 1179 aa17.35■□□□□ 0.37
UBR4-207ENST00000425413 TOPBP1Q92547 1522 aa17.3■□□□□ 0.36
UBR4-207ENST00000425413 POLA1P09884 1462 aaPredicted RBP17.3■□□□□ 0.36
UBR4-207ENST00000425413 TDRD9Q8NDG6 1382 aaKnown RBP17.26■□□□□ 0.35
UBR4-207ENST00000425413 DNMBPQ6XZF7 1577 aa17.26■□□□□ 0.35
UBR4-207ENST00000425413 DIEXFQ68CQ4 756 aaKnown RBP17.25■□□□□ 0.35
UBR4-207ENST00000425413 URB2Q14146 1524 aaKnown RBP17.22■□□□□ 0.35
UBR4-207ENST00000425413 ABCA10Q8WWZ4 1543 aa17.2■□□□□ 0.34
UBR4-207ENST00000425413 FHOD3Q2V2M9 1422 aa17.18■□□□□ 0.34
UBR4-207ENST00000425413 PDS5BQ9NTI5 1447 aa17.16■□□□□ 0.34
UBR4-207ENST00000425413 LAMC3Q9Y6N6 1575 aa17.15■□□□□ 0.34
UBR4-207ENST00000425413 ZNF316A6NFI3 1004 aaPredicted RBP17.15■□□□□ 0.34
UBR4-207ENST00000425413 CCNB3Q8WWL7 1395 aa17.14■□□□□ 0.34
UBR4-207ENST00000425413 FAM50AQ14320 339 aaKnown RBP17.13■□□□□ 0.33
UBR4-207ENST00000425413 RRBP1Q9P2E9 1410 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms