Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
FOXA3P55318 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
FOXA3P55318 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
FOXA3P55318 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
FOXA3P55318 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC15.23■□□□□ 0.03
FOXA3P55318 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA3P55318 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
FOXA3P55318 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
FOXA3P55318 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA3P55318 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
FOXA3P55318 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
FOXA3P55318 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
FOXA3P55318 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
FOXA3P55318 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.22■□□□□ 0.03
FOXA3P55318 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC15.22■□□□□ 0.03
FOXA3P55318 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC15.22■□□□□ 0.03
FOXA3P55318 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA3P55318 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA3P55318 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA3P55318 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
FOXA3P55318 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA3P55318 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
FOXA3P55318 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
FOXA3P55318 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 LSM4-201ENST00000252816 986 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA3P55318 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA3P55318 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA3P55318 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 PRTG-204ENST00000561292 833 ntTSL 3 BASIC15.21■□□□□ 0.03
FOXA3P55318 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA3P55318 MIR3181-201ENST00000578512 73 ntBASIC15.21■□□□□ 0.03
FOXA3P55318 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
FOXA3P55318 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC15.21■□□□□ 0.03
FOXA3P55318 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 EXOC3-AS1-202ENST00000623673 1663 ntBASIC15.21■□□□□ 0.03
FOXA3P55318 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC15.21■□□□□ 0.03
FOXA3P55318 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 BX005040.4-201ENST00000637145 1518 ntBASIC15.21■□□□□ 0.03
FOXA3P55318 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA3P55318 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA3P55318 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA3P55318 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA3P55318 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA3P55318 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA3P55318 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA3P55318 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.02
FOXA3P55318 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA3P55318 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA3P55318 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
FOXA3P55318 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA3P55318 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC15.2■□□□□ 0.02
FOXA3P55318 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA3P55318 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA3P55318 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
FOXA3P55318 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA3P55318 RNF146-205ENST00000477776 762 ntTSL 3 BASIC15.2■□□□□ 0.02
FOXA3P55318 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC15.2■□□□□ 0.02
FOXA3P55318 AL158211.5-201ENST00000623583 2518 ntBASIC15.2■□□□□ 0.02
FOXA3P55318 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA3P55318 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA3P55318 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
FOXA3P55318 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
FOXA3P55318 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 AP005435.1-201ENST00000529293 1178 ntBASIC15.19■□□□□ 0.02
FOXA3P55318 KRT125P-201ENST00000546827 989 ntBASIC15.19■□□□□ 0.02
FOXA3P55318 AC010525.1-201ENST00000585559 441 ntBASIC15.19■□□□□ 0.02
FOXA3P55318 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
FOXA3P55318 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA3P55318 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms