Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SENP1-210ENST00000552189 4967 ntTSL 1 (best)8.73□□□□□ -1.011e-6■■■□□ 16.5
YBX3P16989 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC7.47□□□□□ -1.211e-6■■■□□ 16.5
YBX3P16989 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.511e-6■■■□□ 16.5
YBX3P16989 KIAA0141-206ENST00000508751 998 ntTSL 515.85■□□□□ 0.132e-10■■■□□ 16.5
YBX3P16989 KIAA0141-203ENST00000502729 833 ntTSL 312.58□□□□□ -0.42e-10■■■□□ 16.5
YBX3P16989 TRAPPC11-203ENST00000504526 503 ntTSL 427.69■■■□□ 2.025e-6■■■□□ 16.5
YBX3P16989 SMS-204ENST00000478094 488 ntTSL 417.19■□□□□ 0.344e-8■■■□□ 16.5
YBX3P16989 DAXX-204ENST00000446403 702 ntTSL 317.57■□□□□ 0.46e-7■■■□□ 16.5
YBX3P16989 DAXX-209ENST00000477370 756 ntTSL 317.29■□□□□ 0.366e-7■■■□□ 16.5
YBX3P16989 DAXX-206ENST00000453407 801 ntTSL 513.52□□□□□ -0.256e-7■■■□□ 16.5
YBX3P16989 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.441e-7■■■□□ 16.5
YBX3P16989 MRPL18-204ENST00000480842 1075 ntTSL 316.87■□□□□ 0.291e-7■■■□□ 16.5
YBX3P16989 MRPL18-202ENST00000476826 758 ntTSL 315.83■□□□□ 0.121e-7■■■□□ 16.5
YBX3P16989 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC25.6■■□□□ 1.691e-6■■■□□ 16.5
YBX3P16989 MAST1-203ENST00000588379 1408 ntTSL 1 (best)23.93■■□□□ 1.421e-6■■■□□ 16.5
YBX3P16989 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.081e-6■■■□□ 16.5
YBX3P16989 ID3-202ENST00000463312 623 ntTSL 216.8■□□□□ 0.281e-8■■■□□ 16.5
YBX3P16989 EPHB4-203ENST00000467515 709 ntTSL 220.17■□□□□ 0.822e-8■■■□□ 16.5
YBX3P16989 MORF4L2-203ENST00000422154 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.63e-13■■■□□ 16.5
YBX3P16989 MORF4L2-201ENST00000360458 1824 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.93e-13■■■□□ 16.5
YBX3P16989 MORF4L2-210ENST00000451301 1830 ntAPPRIS P1 TSL 2 BASIC9.21□□□□□ -0.943e-13■■■□□ 16.5
YBX3P16989 MORF4L2-208ENST00000441076 1828 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.993e-13■■■□□ 16.5
YBX3P16989 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC8.01□□□□□ -1.133e-13■■■□□ 16.5
YBX3P16989 GSTO1-205ENST00000470554 547 ntTSL 217.68■□□□□ 0.424e-8■■■□□ 16.4
YBX3P16989 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.246e-8■■■□□ 16.4
YBX3P16989 CLPP-206ENST00000597326 480 ntTSL 517.87■□□□□ 0.453e-7■■■□□ 16.4
YBX3P16989 GRINA-209ENST00000533377 627 ntTSL 220.16■□□□□ 0.827e-10■■■□□ 16.4
YBX3P16989 SLC25A5-202ENST00000460013 775 ntTSL 315.25■□□□□ 0.031e-24■■■□□ 16.4
YBX3P16989 CSNK1D-205ENST00000403276 1040 ntTSL 222.3■■□□□ 1.162e-6■■■□□ 16.4
YBX3P16989 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.341e-9■■■□□ 16.4
YBX3P16989 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC22.04■■□□□ 1.121e-9■■■□□ 16.4
YBX3P16989 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.541e-9■■■□□ 16.4
YBX3P16989 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.391e-9■■■□□ 16.4
YBX3P16989 MRPS18B-206ENST00000259873 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.372e-9■■■□□ 16.4
YBX3P16989 MRPS18B-207ENST00000472229 1409 ntTSL 312.54□□□□□ -0.42e-9■■■□□ 16.4
YBX3P16989 MRPS18B-208ENST00000472267 1610 ntTSL 1 (best)12.45□□□□□ -0.422e-9■■■□□ 16.4
YBX3P16989 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.93■□□□□ 0.622e-8■■■□□ 16.4
YBX3P16989 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC18.07■□□□□ 0.482e-8■■■□□ 16.4
YBX3P16989 COTL1-202ENST00000561707 781 ntTSL 1 (best)15.46■□□□□ 0.071e-21■■■□□ 16.4
YBX3P16989 MRPL11-206ENST00000534488 812 ntTSL 225.37■■□□□ 1.654e-7■■■□□ 16.4
YBX3P16989 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.744e-7■■■□□ 16.4
YBX3P16989 MRPL11-202ENST00000329819 922 ntTSL 2 BASIC14.45□□□□□ -0.14e-7■■■□□ 16.4
YBX3P16989 MRPL11-204ENST00000524576 2209 ntTSL 213.05□□□□□ -0.324e-7■■■□□ 16.4
YBX3P16989 MRPL11-203ENST00000430466 1527 ntTSL 1 (best) BASIC12.83□□□□□ -0.364e-7■■■□□ 16.4
YBX3P16989 ZNF639-207ENST00000491818 1228 ntTSL 532.56■■■□□ 2.82e-6■■■□□ 16.4
YBX3P16989 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.142e-6■■■□□ 16.4
YBX3P16989 ZNF639-202ENST00000466264 1117 ntTSL 1 (best)15.07■□□□□ 02e-6■■■□□ 16.4
YBX3P16989 ZNF639-203ENST00000466663 814 ntTSL 312.12□□□□□ -0.472e-6■■■□□ 16.4
YBX3P16989 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.22e-6■■■□□ 16.4
YBX3P16989 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.352e-6■■■□□ 16.4
YBX3P16989 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.622e-6■■■□□ 16.4
YBX3P16989 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.724e-13■■■□□ 16.4
YBX3P16989 PI4KB-209ENST00000460323 595 ntTSL 311.13□□□□□ -0.635e-7■■■□□ 16.4
YBX3P16989 AC008763.2-202ENST00000599243 570 ntAPPRIS ALT2 TSL 426.08■■□□□ 1.772e-12■■■□□ 16.4
YBX3P16989 STXBP2-207ENST00000595181 632 ntTSL 215.77■□□□□ 0.122e-12■■■□□ 16.4
YBX3P16989 UBE2I-214ENST00000566775 396 ntTSL 312.03□□□□□ -0.481e-6■■■□□ 16.4
YBX3P16989 VTI1B-202ENST00000553619 574 ntTSL 25.85□□□□□ -1.475e-6■■■□□ 16.4
YBX3P16989 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.337e-7■■■□□ 16.4
YBX3P16989 CDK5RAP2-205ENST00000425647 2747 ntTSL 29.71□□□□□ -0.867e-7■■■□□ 16.4
YBX3P16989 TNIP1-215ENST00000522574 1394 ntTSL 211.57□□□□□ -0.562e-8■■■□□ 16.4
YBX3P16989 TNIP1-204ENST00000517504 562 ntTSL 59.83□□□□□ -0.842e-8■■■□□ 16.4
YBX3P16989 CSTF1-201ENST00000217109 4290 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.811e-6■■■□□ 16.4
YBX3P16989 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC36.01■■■■□ 3.361e-21■■■□□ 16.4
YBX3P16989 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.751e-21■■■□□ 16.4
YBX3P16989 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.761e-21■■■□□ 16.4
YBX3P16989 COX4I1-206ENST00000564544 617 ntTSL 318.93■□□□□ 0.621e-21■■■□□ 16.4
YBX3P16989 COX4I1-215ENST00000568339 2271 ntTSL 218.48■□□□□ 0.551e-21■■■□□ 16.4
YBX3P16989 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC17.41■□□□□ 0.381e-21■■■□□ 16.4
YBX3P16989 COX4I1-204ENST00000562929 452 ntTSL 514.31□□□□□ -0.121e-21■■■□□ 16.4
YBX3P16989 COX4I1-207ENST00000564648 1235 ntTSL 511.02□□□□□ -0.651e-21■■■□□ 16.4
YBX3P16989 COX4I1-217ENST00000569997 3946 nt9.72□□□□□ -0.851e-21■■■□□ 16.4
YBX3P16989 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.773e-8■■■□□ 16.4
YBX3P16989 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.453e-8■■■□□ 16.4
YBX3P16989 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.88■□□□□ 0.453e-8■■■□□ 16.4
YBX3P16989 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.453e-8■■■□□ 16.4
YBX3P16989 RPLP2-202ENST00000524867 598 ntTSL 233.42■■■□□ 2.942e-43■■■□□ 16.4
YBX3P16989 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.565e-10■■■□□ 16.4
YBX3P16989 BRIX1-202ENST00000506023 743 ntTSL 314.67□□□□□ -0.065e-10■■■□□ 16.4
YBX3P16989 BRIX1-205ENST00000515798 2196 ntTSL 211.02□□□□□ -0.655e-10■■■□□ 16.4
YBX3P16989 SF3A1-202ENST00000411423 548 ntTSL 425.33■■□□□ 1.655e-7■■■□□ 16.4
YBX3P16989 SF3A1-204ENST00000447376 418 ntTSL 521.11■□□□□ 0.975e-7■■■□□ 16.4
YBX3P16989 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.892e-7■■■□□ 16.4
YBX3P16989 NAA10-209ENST00000466877 1080 ntTSL 1 (best)22.69■■□□□ 1.222e-7■■■□□ 16.4
YBX3P16989 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC21.65■■□□□ 1.062e-7■■■□□ 16.4
YBX3P16989 NAA10-202ENST00000370011 538 ntTSL 521.65■■□□□ 1.062e-7■■■□□ 16.4
YBX3P16989 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC21.65■■□□□ 1.062e-7■■■□□ 16.4
YBX3P16989 NAA10-205ENST00000393712 908 ntTSL 5 BASIC16.88■□□□□ 0.292e-7■■■□□ 16.4
YBX3P16989 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC17.77■□□□□ 0.434e-6■■■□□ 16.4
YBX3P16989 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.424e-6■■■□□ 16.4
YBX3P16989 ALDH1A2-217ENST00000559517 1468 ntTSL 1 (best) BASIC10.9□□□□□ -0.666e-8■■■□□ 16.4
YBX3P16989 IFITM2-201ENST00000399815 382 ntTSL 317.34■□□□□ 0.376e-21■■■□□ 16.4
YBX3P16989 YIF1B-207ENST00000587039 466 ntTSL 520.29■□□□□ 0.841e-63■■■□□ 16.3
YBX3P16989 SLC6A6-210ENST00000622186 6528 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.459e-9■■■□□ 16.3
YBX3P16989 SLC6A6-204ENST00000613060 6526 ntTSL 1 (best) BASIC12.07□□□□□ -0.489e-9■■■□□ 16.3
YBX3P16989 SLC6A6-207ENST00000618278 6401 ntTSL 511.19□□□□□ -0.629e-9■■■□□ 16.3
YBX3P16989 ARHGAP6-207ENST00000491514 841 ntTSL 28.84□□□□□ -0.992e-9■■■□□ 16.3
YBX3P16989 EP300-210ENST00000635584 544 ntTSL 49.06□□□□□ -0.963e-9■■■□□ 16.3
YBX3P16989 MTMR1-211ENST00000490316 713 ntTSL 339.11■■■■□ 3.851e-8■■■□□ 16.3
YBX3P16989 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC35.41■■■■□ 3.261e-8■■■□□ 16.3
YBX3P16989 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.811e-8■■■□□ 16.3
Retrieved 100 of 29,075 protein–RNA pairs in 503.9 ms