RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 AEBP2Q6ZN18 517 aaPredicted RBP20.37■□□□□ 0.85
VTI1B-202ENST00000553619 CHIC1Q5VXU3 224 aa19.37■□□□□ 0.69
VTI1B-202ENST00000553619 SENP3Q9H4L4 574 aaPredicted RBP17.31■□□□□ 0.36
VTI1B-202ENST00000553619 PHF23Q9BUL5 403 aaPredicted RBP17.11■□□□□ 0.33
VTI1B-202ENST00000553619 FOXD1Q16676 465 aa16.16■□□□□ 0.18
VTI1B-202ENST00000553619 PLPPR3Q6T4P5 718 aa15.48■□□□□ 0.07
VTI1B-202ENST00000553619 PPP6R1Q9UPN7 881 aa15.17■□□□□ 0.02
VTI1B-202ENST00000553619 ADRA2BP18089 450 aa15.12■□□□□ 0.01
VTI1B-202ENST00000553619 PIAS4Q8N2W9 510 aaPredicted RBP15.11■□□□□ 0.01
VTI1B-202ENST00000553619 MSH5O43196 834 aa15.06■□□□□ 0
VTI1B-202ENST00000553619 POTEDQ86YR6 584 aa14.64□□□□□ -0.07
VTI1B-202ENST00000553619 MAPK8IP2Q13387 824 aaPredicted RBP13.88□□□□□ -0.19
VTI1B-202ENST00000553619 SCAF1Q9H7N4 1312 aaKnown RBP13.76□□□□□ -0.21
VTI1B-202ENST00000553619 DMRT2Q9Y5R5 561 aa13.75□□□□□ -0.21
VTI1B-202ENST00000553619 PPP4R3CPQ6ZMV5 832 aa13.59□□□□□ -0.23
VTI1B-202ENST00000553619 CNKSR2Q8WXI2 1034 aa13.3□□□□□ -0.28
VTI1B-202ENST00000553619 HOXD11P31277 338 aaPredicted RBP13.26□□□□□ -0.29
VTI1B-202ENST00000553619 DCAF8L1A6NGE4 600 aa13.2□□□□□ -0.3
VTI1B-202ENST00000553619 RNF216Q9NWF9 866 aaPredicted RBP13.17□□□□□ -0.3
VTI1B-202ENST00000553619 NCBP3Q53F19 620 aaKnown RBP13.05□□□□□ -0.32
VTI1B-202ENST00000553619 NPM3O75607 178 aaKnown RBP12.92□□□□□ -0.34
VTI1B-202ENST00000553619 CACNB1Q02641 598 aaPredicted RBP12.9□□□□□ -0.34
VTI1B-202ENST00000553619 RNF39Q9H2S5 420 aa12.88□□□□□ -0.35
VTI1B-202ENST00000553619 DNAJC5BQ9UF47 199 aa12.75□□□□□ -0.37
VTI1B-202ENST00000553619 KCNA4P22459 653 aa12.73□□□□□ -0.37
VTI1B-202ENST00000553619 C1QBPQ07021 282 aaKnown RBP12.67□□□□□ -0.38
VTI1B-202ENST00000553619 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.64□□□□□ -0.392e-8■■■□□ 15.5
VTI1B-202ENST00000553619 U3KPZ7 1027 aaPredicted RBP12.41□□□□□ -0.42
VTI1B-202ENST00000553619 SLC4A2P04920 1241 aa12.33□□□□□ -0.44
VTI1B-202ENST00000553619 SPINK5Q9NQ38 1064 aaPredicted RBP12.22□□□□□ -0.45
VTI1B-202ENST00000553619 CAPN15O75808 1086 aa12.17□□□□□ -0.46
VTI1B-202ENST00000553619 DSG3P32926 999 aa12.09□□□□□ -0.47
VTI1B-202ENST00000553619 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.01□□□□□ -0.49
VTI1B-202ENST00000553619 HNRNPUL2Q1KMD3 747 aaKnown RBP12.01□□□□□ -0.49
VTI1B-202ENST00000553619 SLC4A1APQ9BWU0 796 aaKnown RBP12.01□□□□□ -0.49
VTI1B-202ENST00000553619 TRHP20396 242 aaPredicted RBP11.99□□□□□ -0.49
VTI1B-202ENST00000553619 APLP2Q06481 763 aa11.99□□□□□ -0.49
VTI1B-202ENST00000553619 SAMD1Q6SPF0 538 aaPredicted RBP11.96□□□□□ -0.49
VTI1B-202ENST00000553619 ZNF219Q9P2Y4 722 aaPredicted RBP11.94□□□□□ -0.5
VTI1B-202ENST00000553619 ABCB7O75027 752 aa11.92□□□□□ -0.5
VTI1B-202ENST00000553619 MYCNP04198 464 aaPredicted RBP11.92□□□□□ -0.5
VTI1B-202ENST00000553619 FOXD4L1Q9NU39 408 aa11.84□□□□□ -0.51
VTI1B-202ENST00000553619 ZBTB22O15209 634 aa11.74□□□□□ -0.53
VTI1B-202ENST00000553619 ATF5Q9Y2D1 282 aaPredicted RBP11.69□□□□□ -0.54
VTI1B-202ENST00000553619 POLA2Q14181 598 aa11.67□□□□□ -0.54
VTI1B-202ENST00000553619 RBM42Q9BTD8 480 aaKnown RBP11.49□□□□□ -0.57
VTI1B-202ENST00000553619 POTEHQ6S545 545 aa11.48□□□□□ -0.57
VTI1B-202ENST00000553619 ATXN8OSP0DMR3 200 aa11.43□□□□□ -0.58
VTI1B-202ENST00000553619 ZBTB12Q9Y330 459 aaPredicted RBP11.41□□□□□ -0.58
VTI1B-202ENST00000553619 NISCHQ9Y2I1 1504 aa11.35□□□□□ -0.59
VTI1B-202ENST00000553619 OSCARQ8IYS5 282 aa11.34□□□□□ -0.59
VTI1B-202ENST00000553619 CHRDL2Q6WN34 429 aa11.25□□□□□ -0.61
VTI1B-202ENST00000553619 AKT1S1Q96B36 256 aa11.25□□□□□ -0.61
VTI1B-202ENST00000553619 CSRNP3Q8WYN3 585 aa11.22□□□□□ -0.61
VTI1B-202ENST00000553619 FBLN2P98095 1184 aa11.17□□□□□ -0.62
VTI1B-202ENST00000553619 REM2Q8IYK8 340 aaPredicted RBP11.17□□□□□ -0.62
VTI1B-202ENST00000553619 MKRN4PQ13434 485 aaPredicted RBP11.15□□□□□ -0.62
VTI1B-202ENST00000553619 EHMT2Q96KQ7 1210 aa11.13□□□□□ -0.63
VTI1B-202ENST00000553619 SPDYE2BA6NHP3 402 aa11.08□□□□□ -0.64
VTI1B-202ENST00000553619 SPDYE6P0CI01 402 aa11.08□□□□□ -0.64
VTI1B-202ENST00000553619 SPDYE2Q495Y8 402 aa11.08□□□□□ -0.64
VTI1B-202ENST00000553619 PITPNM1O00562 1244 aa11.07□□□□□ -0.64
VTI1B-202ENST00000553619 PIP4P2Q8N4L2 257 aa11.01□□□□□ -0.65
VTI1B-202ENST00000553619 ZNF692Q9BU19 519 aaPredicted RBP10.96□□□□□ -0.65
VTI1B-202ENST00000553619 SSUH2Q9Y2M2 353 aa10.96□□□□□ -0.65
VTI1B-202ENST00000553619 FXR2P51116 673 aaKnown RBP eCLIP10.94□□□□□ -0.66
VTI1B-202ENST00000553619 SPDYE1Q8NFV5 336 aaPredicted RBP10.87□□□□□ -0.67
VTI1B-202ENST00000553619 CLEC11AQ9Y240 323 aa10.87□□□□□ -0.67
VTI1B-202ENST00000553619 PABPN1Q86U42 306 aaKnown RBP eCLIP10.82□□□□□ -0.68
VTI1B-202ENST00000553619 SP7Q8TDD2 431 aaPredicted RBP10.78□□□□□ -0.68
VTI1B-202ENST00000553619 HAX1O00165 279 aa10.77□□□□□ -0.69
VTI1B-202ENST00000553619 PRKAR2AP13861 404 aaKnown RBP10.77□□□□□ -0.69
VTI1B-202ENST00000553619 CHADLQ6NUI6 762 aa10.69□□□□□ -0.7
VTI1B-202ENST00000553619 PRR29P0C7W0 189 aa10.68□□□□□ -0.7
VTI1B-202ENST00000553619 EVX2Q03828 476 aa10.68□□□□□ -0.7
VTI1B-202ENST00000553619 SPDYE4A6NLX3 237 aa10.62□□□□□ -0.71
VTI1B-202ENST00000553619 C19orf67A6NJJ6 358 aa10.59□□□□□ -0.71
VTI1B-202ENST00000553619 FARP1Q9Y4F1 1045 aaPredicted RBP10.5□□□□□ -0.73
VTI1B-202ENST00000553619 STAG3Q9UJ98 1225 aa10.49□□□□□ -0.73
VTI1B-202ENST00000553619 CREBZFQ9NS37 354 aa10.46□□□□□ -0.73
VTI1B-202ENST00000553619 CD44P16070 742 aaKnown RBP10.43□□□□□ -0.74
VTI1B-202ENST00000553619 GABBR2O75899 941 aa10.42□□□□□ -0.74
VTI1B-202ENST00000553619 PROM2Q8N271 834 aa10.38□□□□□ -0.75
VTI1B-202ENST00000553619 MNX1P50219 401 aaPredicted RBP10.29□□□□□ -0.76
VTI1B-202ENST00000553619 ZRANB1Q9UGI0 708 aa10.29□□□□□ -0.76
VTI1B-202ENST00000553619 ZNF579Q8NAF0 562 aaKnown RBP10.27□□□□□ -0.77
VTI1B-202ENST00000553619 POTEIP0CG38 1075 aa10.23□□□□□ -0.77
VTI1B-202ENST00000553619 NPM1P06748 294 aaKnown RBP eCLIP10.22□□□□□ -0.77
VTI1B-202ENST00000553619 CLCN6P51797 869 aa10.19□□□□□ -0.78
VTI1B-202ENST00000553619 PAK3O75914 559 aaPredicted RBP10.18□□□□□ -0.78
VTI1B-202ENST00000553619 PHF12Q96QT6 1004 aa10.18□□□□□ -0.78
VTI1B-202ENST00000553619 FKBP8Q14318 412 aa10.17□□□□□ -0.78
VTI1B-202ENST00000553619 GALR2O43603 387 aaPredicted RBP10.16□□□□□ -0.78
VTI1B-202ENST00000553619 DCBLD2Q96PD2 775 aa10.13□□□□□ -0.79
VTI1B-202ENST00000553619 LHX8Q68G74 356 aa10.11□□□□□ -0.79
VTI1B-202ENST00000553619 MIER1Q8N108 512 aa10.11□□□□□ -0.79
VTI1B-202ENST00000553619 TSPYL2Q9H2G4 693 aaPredicted RBP10.09□□□□□ -0.79
VTI1B-202ENST00000553619 PLEKHG5O94827 1062 aa10.06□□□□□ -0.8
VTI1B-202ENST00000553619 PLCD3Q8N3E9 789 aa10.04□□□□□ -0.8
VTI1B-202ENST00000553619 MS4A3Q96HJ5 214 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 140.1 ms