Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.651e-8■■□□□ 13.1
U2AF1Q01081 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.543e-6■■□□□ 13.1
U2AF1Q01081 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC18.3■□□□□ 0.521e-8■■□□□ 13.1
U2AF1Q01081 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.363e-6■■□□□ 13.1
U2AF1Q01081 RBPJ-213ENST00000506956 566 ntTSL 417.23■□□□□ 0.351e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-203ENST00000345843 1682 ntTSL 1 (best) BASIC17.1■□□□□ 0.331e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-208ENST00000504907 1682 ntTSL 5 BASIC13.72□□□□□ -0.211e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-224ENST00000513182 537 ntTSL 411.19□□□□□ -0.621e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC10.27□□□□□ -0.761e-8■■□□□ 13.1
U2AF1Q01081 HBP1-208ENST00000468410 2704 ntAPPRIS P1 TSL 2 BASIC9.57□□□□□ -0.883e-6■■□□□ 13.1
U2AF1Q01081 RBPJ-222ENST00000512351 609 ntTSL 49.39□□□□□ -0.911e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC9.2□□□□□ -0.941e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-225ENST00000514380 1519 ntTSL 28.71□□□□□ -1.011e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-228ENST00000514730 569 ntTSL 58.47□□□□□ -1.051e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.071e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-220ENST00000511451 742 ntTSL 26.65□□□□□ -1.341e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-209ENST00000504938 731 ntTSL 36.44□□□□□ -1.381e-8■■□□□ 13.1
U2AF1Q01081 HBP1-203ENST00000463202 2646 ntTSL 1 (best)5.84□□□□□ -1.473e-6■■□□□ 13.1
U2AF1Q01081 HBP1-214ENST00000498408 2332 ntTSL 25.79□□□□□ -1.483e-6■■□□□ 13.1
U2AF1Q01081 RBPJ-218ENST00000510778 716 ntTSL 55.7□□□□□ -1.51e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-227ENST00000514675 578 ntTSL 55.63□□□□□ -1.511e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-221ENST00000511546 572 ntTSL 55.41□□□□□ -1.541e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-219ENST00000511401 577 ntTSL 54.63□□□□□ -1.671e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-215ENST00000507574 607 ntTSL 54.29□□□□□ -1.721e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-231ENST00000515573 698 ntTSL 53.99□□□□□ -1.771e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-230ENST00000515023 388 ntTSL 53.92□□□□□ -1.781e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-229ENST00000514807 340 ntTSL 33.39□□□□□ -1.871e-8■■□□□ 13.1
U2AF1Q01081 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.042e-8■■□□□ 13.1
U2AF1Q01081 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC8.53□□□□□ -1.042e-8■■□□□ 13.1
U2AF1Q01081 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC7.57□□□□□ -1.22e-8■■□□□ 13.1
U2AF1Q01081 PABPC1L-210ENST00000474208 308 ntTSL 515.84■□□□□ 0.134e-12■■□□□ 13
U2AF1Q01081 PABPC1L-215ENST00000489068 442 ntTSL 315.67■□□□□ 0.14e-12■■□□□ 13
U2AF1Q01081 GCKR-206ENST00000478147 579 ntTSL 59.41□□□□□ -0.94e-9■■□□□ 13
U2AF1Q01081 FGL1-204ENST00000398056 1967 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.18e-7■■□□□ 13
U2AF1Q01081 CCNI-205ENST00000507788 595 ntTSL 422.46■■□□□ 1.191e-48■■□□□ 13
U2AF1Q01081 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.361e-48■■□□□ 13
U2AF1Q01081 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC33.92■■■■□ 3.022e-7■■□□□ 13
U2AF1Q01081 SCAF8-204ENST00000461219 677 ntTSL 527.41■■□□□ 1.982e-7■■□□□ 13
U2AF1Q01081 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.842e-7■■□□□ 13
U2AF1Q01081 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC22.63■■□□□ 1.212e-7■■□□□ 13
U2AF1Q01081 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.072e-7■■□□□ 13
U2AF1Q01081 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.992e-7■■□□□ 13
U2AF1Q01081 SCAF8-203ENST00000417268 4944 ntTSL 2 BASIC16.49■□□□□ 0.232e-7■■□□□ 13
U2AF1Q01081 SCAF8-205ENST00000464628 468 ntTSL 515□□□□□ -0.012e-7■■□□□ 13
U2AF1Q01081 SCAF8-202ENST00000367186 4908 ntTSL 2 BASIC13.29□□□□□ -0.282e-7■■□□□ 13
U2AF1Q01081 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC8.49□□□□□ -1.052e-7■■□□□ 13
U2AF1Q01081 CCNYL1-206ENST00000452312 709 ntTSL 56.74□□□□□ -1.332e-7■■□□□ 13
U2AF1Q01081 TPM3-220ENST00000509601 543 ntTSL 424.03■■□□□ 1.447e-10■■□□□ 13
U2AF1Q01081 TPM3-219ENST00000509409 1248 ntTSL 220.59■□□□□ 0.897e-10■■□□□ 13
U2AF1Q01081 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC19.67■□□□□ 0.747e-10■■□□□ 13
U2AF1Q01081 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC19.44■□□□□ 0.77e-10■■□□□ 13
U2AF1Q01081 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC18.92■□□□□ 0.627e-10■■□□□ 13
U2AF1Q01081 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC18.59■□□□□ 0.577e-10■■□□□ 13
U2AF1Q01081 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC16.55■□□□□ 0.247e-10■■□□□ 13
U2AF1Q01081 TPM3-202ENST00000302206 741 ntTSL 3 BASIC15.78■□□□□ 0.127e-10■■□□□ 13
U2AF1Q01081 TPM3-223ENST00000611659 3149 ntTSL 3 BASIC15.03■□□□□ -07e-10■■□□□ 13
U2AF1Q01081 TPM3-212ENST00000368533 3131 ntTSL 1 (best) BASIC13.99□□□□□ -0.177e-10■■□□□ 13
U2AF1Q01081 TPM3-207ENST00000341372 2007 ntTSL 5 BASIC13.64□□□□□ -0.237e-10■■□□□ 13
U2AF1Q01081 TPM3-210ENST00000368530 1523 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.337e-10■■□□□ 13
U2AF1Q01081 TPM3-218ENST00000505010 540 ntTSL 212.4□□□□□ -0.427e-10■■□□□ 13
U2AF1Q01081 TPM3-201ENST00000271850 1219 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.497e-10■■□□□ 13
U2AF1Q01081 TPM3-213ENST00000368545 2147 ntTSL 1 (best)11.39□□□□□ -0.597e-10■■□□□ 13
U2AF1Q01081 TPM3-203ENST00000312970 750 ntTSL 510.88□□□□□ -0.677e-10■■□□□ 13
U2AF1Q01081 TPM3-215ENST00000469717 4041 ntTSL 29.87□□□□□ -0.837e-10■■□□□ 13
U2AF1Q01081 MOB1B-205ENST00000511449 627 ntTSL 322.56■■□□□ 1.23e-11■■□□□ 13
U2AF1Q01081 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC22.56■■□□□ 1.23e-11■■□□□ 13
U2AF1Q01081 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.173e-11■■□□□ 13
U2AF1Q01081 IARS-205ENST00000443024 4341 ntTSL 5 BASIC9.7□□□□□ -0.861e-8■■□□□ 13
U2AF1Q01081 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC9.31□□□□□ -0.921e-8■■□□□ 13
U2AF1Q01081 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.031e-8■■□□□ 13
U2AF1Q01081 IARS-213ENST00000627121 4587 ntTSL 5 BASIC7.85□□□□□ -1.151e-8■■□□□ 13
U2AF1Q01081 PNP-202ENST00000553418 557 ntTSL 320.81■□□□□ 0.923e-12■■□□□ 13
U2AF1Q01081 PNP-208ENST00000557229 992 ntTSL 1 (best)16.9■□□□□ 0.33e-12■■□□□ 13
U2AF1Q01081 PNP-201ENST00000361505 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.243e-12■■□□□ 13
U2AF1Q01081 PNP-204ENST00000554056 1635 ntTSL 514.64□□□□□ -0.073e-12■■□□□ 13
U2AF1Q01081 PNP-207ENST00000556754 2573 ntTSL 211.69□□□□□ -0.543e-12■■□□□ 13
U2AF1Q01081 PNP-205ENST00000554065 554 ntTSL 49.38□□□□□ -0.913e-12■■□□□ 13
U2AF1Q01081 PNP-203ENST00000553591 770 ntTSL 58.69□□□□□ -1.023e-12■■□□□ 13
U2AF1Q01081 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.041e-8■■□□□ 13
U2AF1Q01081 SNX9-202ENST00000614703 542 ntTSL 412.77□□□□□ -0.371e-8■■□□□ 13
U2AF1Q01081 SNX9-203ENST00000614800 553 ntTSL 48.71□□□□□ -1.021e-8■■□□□ 13
U2AF1Q01081 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC31.59■■■□□ 2.655e-8■■□□□ 13
U2AF1Q01081 FBXO7-204ENST00000425028 1921 ntTSL 527.36■■□□□ 1.975e-8■■□□□ 13
U2AF1Q01081 FBXO7-203ENST00000420700 1900 ntTSL 522.87■■□□□ 1.255e-8■■□□□ 13
U2AF1Q01081 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.215e-8■■□□□ 13
U2AF1Q01081 FBXO7-209ENST00000492535 6884 ntTSL 510.11□□□□□ -0.795e-8■■□□□ 13
U2AF1Q01081 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC9.5□□□□□ -0.895e-8■■□□□ 13
U2AF1Q01081 ASNS-217ENST00000495255 1678 ntTSL 214.77□□□□□ -0.041e-13■■□□□ 12.9
U2AF1Q01081 SESTD1-203ENST00000428443 10615 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.544e-7■■□□□ 12.9
U2AF1Q01081 SESTD1-206ENST00000446758 1699 ntTSL 26.07□□□□□ -1.444e-7■■□□□ 12.9
U2AF1Q01081 SESTD1-201ENST00000335289 1675 ntTSL 54.82□□□□□ -1.644e-7■■□□□ 12.9
U2AF1Q01081 HECTD1-211ENST00000555915 775 ntTSL 511.84□□□□□ -0.514e-11■■□□□ 12.9
U2AF1Q01081 HECTD1-208ENST00000554882 3748 ntTSL 56.59□□□□□ -1.364e-11■■□□□ 12.9
U2AF1Q01081 HECTD1-210ENST00000555843 4281 ntTSL 26□□□□□ -1.454e-11■■□□□ 12.9
U2AF1Q01081 HECTD1-204ENST00000553957 4395 ntTSL 25.63□□□□□ -1.514e-11■■□□□ 12.9
U2AF1Q01081 DNAJC6-207ENST00000494710 1621 ntTSL 533.23■■■□□ 2.911e-6■■□□□ 12.9
U2AF1Q01081 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.131e-6■■□□□ 12.9
U2AF1Q01081 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC27.08■■□□□ 1.931e-6■■□□□ 12.9
U2AF1Q01081 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC25.79■■□□□ 1.721e-6■■□□□ 12.9
U2AF1Q01081 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.61e-6■■□□□ 12.9
Retrieved 100 of 10,096 protein–RNA pairs in 67.3 ms