RNA–Protein interactions for RNA: ENST00000302206.9

TPM3-202, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 741 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-202ENST00000302206 NISCHQ9Y2I1 1504 aa26.96■■□□□ 1.91
TPM3-202ENST00000302206 ABCC9O60706 1549 aa23.68■■□□□ 1.38
TPM3-202ENST00000302206 CCDC180Q9P1Z9 1646 aa23.51■■□□□ 1.35
TPM3-202ENST00000302206 ZCCHC6Q5VYS8 1495 aaKnown RBP22.68■■□□□ 1.22
TPM3-202ENST00000302206 DNAJC5BQ9UF47 199 aa22.62■■□□□ 1.21
TPM3-202ENST00000302206 DCAF1Q9Y4B6 1507 aa22.39■■□□□ 1.17
TPM3-202ENST00000302206 RB1CC1Q8TDY2 1594 aa22.33■■□□□ 1.17
TPM3-202ENST00000302206 MYO15BQ96JP2 1530 aa22.1■■□□□ 1.13
TPM3-202ENST00000302206 CHIC1Q5VXU3 224 aa22.06■■□□□ 1.12
TPM3-202ENST00000302206 NACADO15069 1562 aa22.04■■□□□ 1.12
TPM3-202ENST00000302206 DCAF8L2P0C7V8 631 aa22.02■■□□□ 1.12
TPM3-202ENST00000302206 PABPN1Q86U42 306 aaKnown RBP eCLIP21.92■■□□□ 1.1
TPM3-202ENST00000302206 SHROOM4Q9ULL8 1493 aa21.9■■□□□ 1.1
TPM3-202ENST00000302206 UNC13AQ9UPW8 1703 aa21.83■■□□□ 1.08
TPM3-202ENST00000302206 BICRAQ9NZM4 1560 aa21.65■■□□□ 1.06
TPM3-202ENST00000302206 AEBP2Q6ZN18 517 aaPredicted RBP21.51■■□□□ 1.03
TPM3-202ENST00000302206 SCRIBQ14160 1630 aa21.5■■□□□ 1.03
TPM3-202ENST00000302206 CECR2Q9BXF3 1484 aa21.39■■□□□ 1.02
TPM3-202ENST00000302206 CC2D2AQ9P2K1 1620 aa21.37■■□□□ 1.01
TPM3-202ENST00000302206 DNAJC5Q9H3Z4 198 aa21.23■□□□□ 0.99
TPM3-202ENST00000302206 EIF4G1Q04637 1599 aaKnown RBP21.19■□□□□ 0.98
TPM3-202ENST00000302206 SUPT5HO00267 1087 aaKnown RBP21.15■□□□□ 0.98
TPM3-202ENST00000302206 RSF1Q96T23 1441 aaPredicted RBP20.94■□□□□ 0.94
TPM3-202ENST00000302206 BAZ1AQ9NRL2 1556 aaPredicted RBP20.82■□□□□ 0.92
TPM3-202ENST00000302206 MROH2BQ7Z745 1585 aa20.79■□□□□ 0.92
TPM3-202ENST00000302206 SMARCA4P51532 1647 aa20.69■□□□□ 0.9
TPM3-202ENST00000302206 CUX2O14529 1486 aa20.66■□□□□ 0.9
TPM3-202ENST00000302206 WIZO95785 1651 aa20.61■□□□□ 0.89
TPM3-202ENST00000302206 ERCC6Q03468 1493 aa20.52■□□□□ 0.88
TPM3-202ENST00000302206 PEG3Q9GZU2 1588 aa20.5■□□□□ 0.87
TPM3-202ENST00000302206 TOP2AP11388 1531 aaKnown RBP20.48■□□□□ 0.87
TPM3-202ENST00000302206 SMARCA2P51531 1590 aa20.34■□□□□ 0.85
TPM3-202ENST00000302206 ATAD2BQ9ULI0 1458 aa20.31■□□□□ 0.84
TPM3-202ENST00000302206 NCAPD3P42695 1498 aa20.3■□□□□ 0.84
TPM3-202ENST00000302206 CCDC88BA6NC98 1476 aa20.22■□□□□ 0.83
TPM3-202ENST00000302206 BAZ1BQ9UIG0 1483 aaKnown RBP20.19■□□□□ 0.82
TPM3-202ENST00000302206 NESP48681 1621 aa20.16■□□□□ 0.82
TPM3-202ENST00000302206 HMGXB3Q12766 1538 aa20.15■□□□□ 0.82
TPM3-202ENST00000302206 THOC2Q8NI27 1593 aaKnown RBP20.1■□□□□ 0.81
TPM3-202ENST00000302206 TRIM41Q8WV44 630 aa20.1■□□□□ 0.81
TPM3-202ENST00000302206 LAMC3Q9Y6N6 1575 aa19.99■□□□□ 0.79
TPM3-202ENST00000302206 KIF21AQ7Z4S6 1674 aa19.94■□□□□ 0.78
TPM3-202ENST00000302206 PDS5BQ9NTI5 1447 aa19.88■□□□□ 0.77
TPM3-202ENST00000302206 ABCC8Q09428 1581 aa19.78■□□□□ 0.76
TPM3-202ENST00000302206 CFTRP13569 1480 aa19.73■□□□□ 0.75
TPM3-202ENST00000302206 MRC2Q9UBG0 1479 aa19.73■□□□□ 0.75
TPM3-202ENST00000302206 WRNQ14191 1432 aaPredicted RBP eCLIP19.7■□□□□ 0.74
TPM3-202ENST00000302206 WDR62O43379 1518 aa19.7■□□□□ 0.74
TPM3-202ENST00000302206 CADPSQ9ULU8 1353 aa19.67■□□□□ 0.74
TPM3-202ENST00000302206 PRDM2Q13029 1718 aa19.66■□□□□ 0.74
TPM3-202ENST00000302206 OSCARQ8IYS5 282 aa19.6■□□□□ 0.73
TPM3-202ENST00000302206 SYNJ1O43426 1573 aa19.59■□□□□ 0.73
TPM3-202ENST00000302206 EEA1Q15075 1411 aa19.58■□□□□ 0.72
TPM3-202ENST00000302206 CEP164Q9UPV0 1460 aa19.56■□□□□ 0.72
TPM3-202ENST00000302206 TOP2BQ02880 1626 aa19.56■□□□□ 0.72
TPM3-202ENST00000302206 BIVM-ERCC5R4GMW8 1640 aa19.55■□□□□ 0.72
TPM3-202ENST00000302206 LOC105371045A0A1W2PR82 267 aa19.54■□□□□ 0.72
TPM3-202ENST00000302206 FAM9AQ8IZU1 332 aaPredicted RBP19.48■□□□□ 0.71
TPM3-202ENST00000302206 FANCD2Q9BXW9 1451 aa19.46■□□□□ 0.71
TPM3-202ENST00000302206 SOGA1O94964 1423 aa19.45■□□□□ 0.7
TPM3-202ENST00000302206 CUX1P39880 1505 aa19.44■□□□□ 0.7
TPM3-202ENST00000302206 PHF23Q9BUL5 403 aaPredicted RBP19.43■□□□□ 0.7
TPM3-202ENST00000302206 RIMBP3CA6NJZ7 1639 aa19.43■□□□□ 0.7
TPM3-202ENST00000302206 RIMBP3BA6NNM3 1639 aa19.43■□□□□ 0.7
TPM3-202ENST00000302206 RIMBP3Q9UFD9 1639 aa19.43■□□□□ 0.7
TPM3-202ENST00000302206 CSRNP3Q8WYN3 585 aa19.36■□□□□ 0.69
TPM3-202ENST00000302206 RUSC2Q8N2Y8 1516 aa19.35■□□□□ 0.69
TPM3-202ENST00000302206 URB2Q14146 1524 aaKnown RBP19.31■□□□□ 0.68
TPM3-202ENST00000302206 ARHGEF11O15085 1522 aa19.3■□□□□ 0.68
TPM3-202ENST00000302206 KIF21BO75037 1637 aa19.29■□□□□ 0.68
TPM3-202ENST00000302206 DNMBPQ6XZF7 1577 aa19.27■□□□□ 0.67
TPM3-202ENST00000302206 GOLGA3Q08378 1498 aa19.25■□□□□ 0.67
TPM3-202ENST00000302206 TNIKQ9UKE5 1360 aa19.23■□□□□ 0.67
TPM3-202ENST00000302206 KIF27Q86VH2 1401 aa19.22■□□□□ 0.67
TPM3-202ENST00000302206 FGD5Q6ZNL6 1462 aa19.2■□□□□ 0.66
TPM3-202ENST00000302206 TOPBP1Q92547 1522 aa19.2■□□□□ 0.66
TPM3-202ENST00000302206 TRHP20396 242 aaPredicted RBP19.18■□□□□ 0.66
TPM3-202ENST00000302206 CYB5RLQ6IPT4 315 aa19.18■□□□□ 0.66
TPM3-202ENST00000302206 IFT140Q96RY7 1462 aa19.17■□□□□ 0.66
TPM3-202ENST00000302206 ZNF608Q9ULD9 1512 aaPredicted RBP19.16■□□□□ 0.66
TPM3-202ENST00000302206 ERICH3Q5RHP9 1530 aa19.15■□□□□ 0.66
TPM3-202ENST00000302206 PRXQ9BXM0 1461 aa19.13■□□□□ 0.65
TPM3-202ENST00000302206 EHMT2Q96KQ7 1210 aa19.11■□□□□ 0.65
TPM3-202ENST00000302206 POLA1P09884 1462 aaPredicted RBP19.09■□□□□ 0.65
TPM3-202ENST00000302206 ABCA10Q8WWZ4 1543 aa19.09■□□□□ 0.65
TPM3-202ENST00000302206 EIF4G3O43432 1585 aaKnown RBP19.08■□□□□ 0.65
TPM3-202ENST00000302206 CEP162Q5TB80 1403 aa19.08■□□□□ 0.64
TPM3-202ENST00000302206 CHD1O14646 1710 aa19.06■□□□□ 0.64
TPM3-202ENST00000302206 RAPGEF2Q9Y4G8 1499 aa19.06■□□□□ 0.64
TPM3-202ENST00000302206 ARAP1Q96P48 1450 aa19.05■□□□□ 0.64
TPM3-202ENST00000302206 UBTFP17480 764 aaKnown RBP19.05■□□□□ 0.64
TPM3-202ENST00000302206 WDR97A6NE52 1622 aa19.01■□□□□ 0.63
TPM3-202ENST00000302206 IGF1RP08069 1367 aa19.01■□□□□ 0.63
TPM3-202ENST00000302206 RAD54L2Q9Y4B4 1467 aa18.99■□□□□ 0.63
TPM3-202ENST00000302206 FBLN2P98095 1184 aa18.95■□□□□ 0.62
TPM3-202ENST00000302206 AQRO60306 1485 aaKnown RBP eCLIP18.94■□□□□ 0.626e-8■□□□□ 10.5
TPM3-202ENST00000302206 ABCA5Q8WWZ7 1642 aa18.92■□□□□ 0.62
TPM3-202ENST00000302206 CARMIL1Q5VZK9 1371 aa18.92■□□□□ 0.62
TPM3-202ENST00000302206 CLIP1P30622 1438 aa18.91■□□□□ 0.62
TPM3-202ENST00000302206 TARBP1Q13395 1621 aaKnown RBP18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms