Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RFC3P40938 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RFC3P40938 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.63■□□□□ 0.57
RFC3P40938 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RFC3P40938 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.63■□□□□ 0.57
RFC3P40938 AC092667.1-201ENST00000434301 2586 ntBASIC18.63■□□□□ 0.57
RFC3P40938 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.63■□□□□ 0.57
RFC3P40938 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFC3P40938 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.63■□□□□ 0.57
RFC3P40938 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.63■□□□□ 0.57
RFC3P40938 AC128676.1-201ENST00000454392 318 ntBASIC18.63■□□□□ 0.57
RFC3P40938 AC098590.1-201ENST00000468126 897 ntBASIC18.63■□□□□ 0.57
RFC3P40938 RPS2P52-201ENST00000469610 820 ntBASIC18.63■□□□□ 0.57
RFC3P40938 AC026366.1-201ENST00000488803 879 ntBASIC18.63■□□□□ 0.57
RFC3P40938 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.63■□□□□ 0.57
RFC3P40938 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RFC3P40938 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.63■□□□□ 0.57
RFC3P40938 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFC3P40938 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
RFC3P40938 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFC3P40938 AC092368.3-202ENST00000574180 1591 ntBASIC18.63■□□□□ 0.57
RFC3P40938 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFC3P40938 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
RFC3P40938 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.62■□□□□ 0.57
RFC3P40938 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC3P40938 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RFC3P40938 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC3P40938 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC3P40938 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.62■□□□□ 0.57
RFC3P40938 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.62■□□□□ 0.57
RFC3P40938 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC3P40938 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC3P40938 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.62■□□□□ 0.57
RFC3P40938 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.62■□□□□ 0.57
RFC3P40938 AC060766.5-201ENST00000590539 871 ntBASIC18.62■□□□□ 0.57
RFC3P40938 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RFC3P40938 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.62■□□□□ 0.57
RFC3P40938 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.62■□□□□ 0.57
RFC3P40938 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.62■□□□□ 0.57
RFC3P40938 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC3P40938 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC3P40938 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RFC3P40938 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC3P40938 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RFC3P40938 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RFC3P40938 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.61■□□□□ 0.57
RFC3P40938 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RFC3P40938 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
RFC3P40938 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.61■□□□□ 0.57
RFC3P40938 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
RFC3P40938 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.61■□□□□ 0.57
RFC3P40938 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RFC3P40938 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RFC3P40938 AL158047.1-201ENST00000445918 881 ntBASIC18.61■□□□□ 0.57
RFC3P40938 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
RFC3P40938 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.61■□□□□ 0.57
RFC3P40938 AC093827.2-201ENST00000512654 315 ntBASIC18.61■□□□□ 0.57
RFC3P40938 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.61■□□□□ 0.57
RFC3P40938 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.61■□□□□ 0.57
RFC3P40938 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.61■□□□□ 0.57
RFC3P40938 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.61■□□□□ 0.57
RFC3P40938 HLA-B-256ENST00000639848 1089 ntBASIC18.61■□□□□ 0.57
RFC3P40938 AC073648.6-201ENST00000641589 218 ntBASIC18.61■□□□□ 0.57
RFC3P40938 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RFC3P40938 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.61■□□□□ 0.57
RFC3P40938 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.61■□□□□ 0.57
RFC3P40938 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RFC3P40938 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.61■□□□□ 0.57
RFC3P40938 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC3P40938 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFC3P40938 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
RFC3P40938 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.6■□□□□ 0.57
RFC3P40938 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFC3P40938 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFC3P40938 AC087633.2-202ENST00000565166 1439 ntBASIC18.6■□□□□ 0.57
RFC3P40938 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC3P40938 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
RFC3P40938 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFC3P40938 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.6■□□□□ 0.57
RFC3P40938 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFC3P40938 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RFC3P40938 PNMA6B-201ENST00000538162 1200 ntBASIC18.6■□□□□ 0.57
RFC3P40938 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms