Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 TTC3-211ENST00000460328 573 ntTSL 37.19□□□□□ -1.267e-9■■■□□ 15.3
SMNDC1O75940 CTTN-207ENST00000483662 736 ntTSL 27.18□□□□□ -1.263e-6■■■□□ 15.3
SMNDC1O75940 TTLL4-207ENST00000434241 476 ntTSL 56.91□□□□□ -1.33e-6■■■□□ 15.3
SMNDC1O75940 WDR43-205ENST00000446643 579 ntTSL 46.88□□□□□ -1.313e-6■■■□□ 15.3
SMNDC1O75940 TTLL4-218ENST00000480472 765 ntTSL 46.86□□□□□ -1.313e-6■■■□□ 15.3
SMNDC1O75940 XPO1-220ENST00000481214 720 ntTSL 26.84□□□□□ -1.313e-6■■■□□ 15.3
SMNDC1O75940 TTLL4-204ENST00000417196 811 ntTSL 56.65□□□□□ -1.343e-6■■■□□ 15.3
SMNDC1O75940 TTLL4-215ENST00000467841 973 ntTSL 46.38□□□□□ -1.393e-6■■■□□ 15.3
SMNDC1O75940 STIP1-212ENST00000544739 562 ntTSL 35.86□□□□□ -1.473e-6■■■□□ 15.3
SMNDC1O75940 RN7SKP70-201ENST00000516655 271 ntBASIC5.74□□□□□ -1.493e-6■■■□□ 15.3
SMNDC1O75940 HSPD1-206ENST00000430176 754 ntTSL 55.54□□□□□ -1.521e-16■■■□□ 15.3
SMNDC1O75940 STIP1-205ENST00000537479 601 ntTSL 25.37□□□□□ -1.553e-6■■■□□ 15.3
SMNDC1O75940 STIP1-206ENST00000538497 582 ntTSL 25.37□□□□□ -1.553e-6■■■□□ 15.3
SMNDC1O75940 XPO1-207ENST00000436018 318 ntTSL 45.22□□□□□ -1.573e-6■■■□□ 15.3
SMNDC1O75940 COL18A1-205ENST00000423214 839 ntTSL 514.64□□□□□ -0.075e-6■■■□□ 15.2
SMNDC1O75940 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.31■□□□□ 0.848e-6■■■□□ 15.2
SMNDC1O75940 PCGF3-205ENST00000430644 2621 ntTSL 218.96■□□□□ 0.638e-6■■■□□ 15.2
SMNDC1O75940 PCGF3-204ENST00000427463 582 ntTSL 318.95■□□□□ 0.628e-6■■■□□ 15.2
SMNDC1O75940 PCGF3-210ENST00000482726 538 ntTSL 418.95■□□□□ 0.628e-6■■■□□ 15.2
SMNDC1O75940 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.388e-6■■■□□ 15.2
SMNDC1O75940 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.388e-6■■■□□ 15.2
SMNDC1O75940 PCGF3-209ENST00000475288 604 ntTSL 316.09■□□□□ 0.178e-6■■■□□ 15.2
SMNDC1O75940 PCGF3-203ENST00000419774 589 ntTSL 515.28■□□□□ 0.048e-6■■■□□ 15.2
SMNDC1O75940 PCGF3-211ENST00000484141 566 ntTSL 215.01□□□□□ -0.018e-6■■■□□ 15.2
SMNDC1O75940 PCGF3-207ENST00000440452 3609 ntTSL 213.26□□□□□ -0.298e-6■■■□□ 15.2
SMNDC1O75940 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.372e-6■■■□□ 15.2
SMNDC1O75940 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.152e-6■■■□□ 15.2
SMNDC1O75940 BRD2-212ENST00000482914 4834 ntTSL 1 (best)14.41□□□□□ -0.12e-6■■■□□ 15.2
SMNDC1O75940 BRD2-203ENST00000395287 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.742e-6■■■□□ 15.2
SMNDC1O75940 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.525e-7■■■□□ 15.2
SMNDC1O75940 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.285e-7■■■□□ 15.2
SMNDC1O75940 ADAMTSL4-202ENST00000369038 4167 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.262e-6■■■□□ 15.2
SMNDC1O75940 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.112e-10■■■□□ 15.2
SMNDC1O75940 HCFC1-202ENST00000369984 8375 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.342e-10■■■□□ 15.2
SMNDC1O75940 FURIN-203ENST00000559353 587 ntTSL 314.15□□□□□ -0.146e-7■■■□□ 15.2
SMNDC1O75940 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.832e-6■■■□□ 15.2
SMNDC1O75940 ZYX-207ENST00000457235 703 ntTSL 422.88■■□□□ 1.257e-7■■■□□ 15.2
SMNDC1O75940 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.957e-7■■■□□ 15.2
SMNDC1O75940 ZYX-208ENST00000468083 1146 ntTSL 519.45■□□□□ 0.77e-7■■■□□ 15.2
SMNDC1O75940 ZYX-206ENST00000449630 533 ntTSL 416.52■□□□□ 0.247e-7■■■□□ 15.2
SMNDC1O75940 ZYX-202ENST00000354434 2050 ntAPPRIS ALT2 TSL 214.94□□□□□ -0.027e-7■■■□□ 15.2
SMNDC1O75940 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.39■□□□□ 0.373e-33■■■□□ 15.2
SMNDC1O75940 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.083e-33■■■□□ 15.2
SMNDC1O75940 SNORA74B-201ENST00000391100 201 ntBASIC8.37□□□□□ -1.073e-33■■■□□ 15.2
SMNDC1O75940 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC7.36□□□□□ -1.233e-33■■■□□ 15.2
SMNDC1O75940 HNRNPH1-205ENST00000502632 1509 ntTSL 214.11□□□□□ -0.154e-15■■■□□ 15.2
SMNDC1O75940 HNRNPH1-206ENST00000502904 2913 ntTSL 210.4□□□□□ -0.744e-15■■■□□ 15.2
SMNDC1O75940 HNRNPH1-227ENST00000515481 5564 ntTSL 25.33□□□□□ -1.564e-15■■■□□ 15.2
SMNDC1O75940 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.421e-26■■■□□ 15.2
SMNDC1O75940 RPL13-212ENST00000563749 2367 nt22.32■■□□□ 1.161e-26■■■□□ 15.2
SMNDC1O75940 RPL13-209ENST00000491523 698 ntTSL 320.18■□□□□ 0.821e-26■■■□□ 15.2
SMNDC1O75940 RPL13-208ENST00000487034 615 ntTSL 1 (best)19.98■□□□□ 0.791e-26■■■□□ 15.2
SMNDC1O75940 RPL13-203ENST00000399461 879 ntTSL 219.9■□□□□ 0.781e-26■■■□□ 15.2
SMNDC1O75940 RPL13-205ENST00000467736 528 ntTSL 315.03■□□□□ -01e-26■■■□□ 15.2
SMNDC1O75940 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.051e-26■■■□□ 15.2
SMNDC1O75940 RPL13-210ENST00000562879 958 ntTSL 1 (best)13.57□□□□□ -0.241e-26■■■□□ 15.2
SMNDC1O75940 RPL13-207ENST00000484610 924 ntTSL 513.4□□□□□ -0.261e-26■■■□□ 15.2
SMNDC1O75940 RPL13-211ENST00000563270 554 ntTSL 413.35□□□□□ -0.271e-26■■■□□ 15.2
SMNDC1O75940 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC12.93□□□□□ -0.341e-26■■■□□ 15.2
SMNDC1O75940 RPL13-201ENST00000311528 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.351e-26■■■□□ 15.2
SMNDC1O75940 RPL13-213ENST00000565571 568 ntTSL 212.83□□□□□ -0.361e-26■■■□□ 15.2
SMNDC1O75940 HNRNPH1-231ENST00000519033 832 ntTSL 315.11■□□□□ 0.014e-15■■■□□ 15.1
SMNDC1O75940 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC12.65□□□□□ -0.381e-323■■■□□ 15.1
SMNDC1O75940 ULK1-204ENST00000540647 1211 ntTSL 217.78■□□□□ 0.446e-7■■■□□ 15.1
SMNDC1O75940 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.751e-6■■■□□ 15.1
SMNDC1O75940 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.465e-6■■■□□ 15.1
SMNDC1O75940 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.691e-7■■■□□ 15.1
SMNDC1O75940 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC29.12■■■□□ 2.251e-7■■■□□ 15.1
SMNDC1O75940 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC25.55■■□□□ 1.681e-7■■■□□ 15.1
SMNDC1O75940 TAL1-203ENST00000459729 1796 ntTSL 1 (best)23.96■■□□□ 1.431e-7■■■□□ 15.1
SMNDC1O75940 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.211e-7■■■□□ 15.1
SMNDC1O75940 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC22.53■■□□□ 1.21e-7■■■□□ 15.1
SMNDC1O75940 RGL2-237ENST00000425946 640 ntTSL 320.86■□□□□ 0.931e-7■■■□□ 15.1
SMNDC1O75940 RGL2-244ENST00000485077 1020 ntTSL 219.64■□□□□ 0.731e-7■■■□□ 15.1
SMNDC1O75940 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.691e-7■■■□□ 15.1
SMNDC1O75940 RGL2-245ENST00000491168 2316 ntTSL 218.19■□□□□ 0.51e-7■■■□□ 15.1
SMNDC1O75940 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.51e-7■■■□□ 15.1
SMNDC1O75940 UPF3A-211ENST00000618700 1210 ntTSL 217.44■□□□□ 0.381e-7■■■□□ 15.1
SMNDC1O75940 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.281e-7■■■□□ 15.1
SMNDC1O75940 RGL2-246ENST00000494550 1027 ntTSL 316.47■□□□□ 0.231e-7■■■□□ 15.1
SMNDC1O75940 RGL2-243ENST00000483151 2772 ntTSL 216.33■□□□□ 0.21e-7■■■□□ 15.1
SMNDC1O75940 UPF3A-203ENST00000474056 748 ntTSL 316.1■□□□□ 0.171e-7■■■□□ 15.1
SMNDC1O75940 UPF3A-206ENST00000480362 965 ntTSL 515.69■□□□□ 0.11e-7■■■□□ 15.1
SMNDC1O75940 RGL2-238ENST00000437840 2687 ntTSL 1 (best)15.58■□□□□ 0.081e-7■■■□□ 15.1
SMNDC1O75940 CBX4-204ENST00000495122 490 ntTSL 315.47■□□□□ 0.071e-7■■■□□ 15.1
SMNDC1O75940 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.087e-11■■■□□ 15.1
SMNDC1O75940 MACF1-202ENST00000360115 2824 ntTSL 514.34□□□□□ -0.111e-7■■■□□ 15.1
SMNDC1O75940 RGL2-239ENST00000460988 754 ntTSL 314.14□□□□□ -0.151e-7■■■□□ 15.1
SMNDC1O75940 UPF3A-208ENST00000484246 699 ntTSL 314.13□□□□□ -0.151e-7■■■□□ 15.1
SMNDC1O75940 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.177e-11■■■□□ 15.1
SMNDC1O75940 HERPUD1-219ENST00000570273 1425 ntTSL 1 (best)13.7□□□□□ -0.227e-11■■■□□ 15.1
SMNDC1O75940 FNBP4-201ENST00000263773 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.41e-7■■■□□ 15.1
SMNDC1O75940 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC12.52□□□□□ -0.417e-11■■■□□ 15.1
SMNDC1O75940 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC12.43□□□□□ -0.427e-11■■■□□ 15.1
SMNDC1O75940 HERPUD1-210ENST00000565966 798 ntTSL 512.36□□□□□ -0.437e-11■■■□□ 15.1
SMNDC1O75940 HERPUD1-218ENST00000569569 1125 ntTSL 212.36□□□□□ -0.437e-11■■■□□ 15.1
SMNDC1O75940 UPF3A-210ENST00000493727 937 ntTSL 512.04□□□□□ -0.481e-7■■■□□ 15.1
SMNDC1O75940 RGL2-242ENST00000478610 1009 ntTSL 312□□□□□ -0.491e-7■■■□□ 15.1
SMNDC1O75940 FNBP4-210ENST00000531394 605 ntTSL 310.2□□□□□ -0.781e-7■■■□□ 15.1
SMNDC1O75940 TCF25-210ENST00000563484 468 ntTSL 29.98□□□□□ -0.811e-7■■■□□ 15.1
Retrieved 100 of 11,362 protein–RNA pairs in 160.6 ms