RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 NISCHQ9Y2I1 1504 aa27.67■■■□□ 2.02
HERPUD1-204ENST00000439977 SHROOM4Q9ULL8 1493 aa24.12■■□□□ 1.45
HERPUD1-204ENST00000439977 SUPT5HO00267 1087 aaKnown RBP23.7■■□□□ 1.38
HERPUD1-204ENST00000439977 DCAF8L2P0C7V8 631 aa23.51■■□□□ 1.35
HERPUD1-204ENST00000439977 ZCCHC6Q5VYS8 1495 aaKnown RBP23.37■■□□□ 1.33
HERPUD1-204ENST00000439977 CCDC180Q9P1Z9 1646 aa23.22■■□□□ 1.31
HERPUD1-204ENST00000439977 CHIC1Q5VXU3 224 aa22.88■■□□□ 1.25
HERPUD1-204ENST00000439977 MYO15BQ96JP2 1530 aa22.77■■□□□ 1.24
HERPUD1-204ENST00000439977 DCAF1Q9Y4B6 1507 aa22.48■■□□□ 1.19
HERPUD1-204ENST00000439977 PCGF6Q9BYE7 350 aa22.4■■□□□ 1.18
HERPUD1-204ENST00000439977 LOC105371045A0A1W2PR82 267 aa22.39■■□□□ 1.18
HERPUD1-204ENST00000439977 HRCP23327 699 aa22.25■■□□□ 1.15
HERPUD1-204ENST00000439977 SCRIBQ14160 1630 aa22.15■■□□□ 1.14
HERPUD1-204ENST00000439977 RSF1Q96T23 1441 aaPredicted RBP22.04■■□□□ 1.12
HERPUD1-204ENST00000439977 PPARGC1BQ86YN6 1023 aaKnown RBP22.03■■□□□ 1.12
HERPUD1-204ENST00000439977 ABCC9O60706 1549 aa22.02■■□□□ 1.12
HERPUD1-204ENST00000439977 FAM9AQ8IZU1 332 aaPredicted RBP21.97■■□□□ 1.11
HERPUD1-204ENST00000439977 EHMT2Q96KQ7 1210 aa21.95■■□□□ 1.1
HERPUD1-204ENST00000439977 TRIM41Q8WV44 630 aa21.93■■□□□ 1.1
HERPUD1-204ENST00000439977 RB1CC1Q8TDY2 1594 aa21.79■■□□□ 1.08
HERPUD1-204ENST00000439977 CECR2Q9BXF3 1484 aa21.76■■□□□ 1.07
HERPUD1-204ENST00000439977 TRIM26Q12899 539 aaPredicted RBP21.76■■□□□ 1.07
HERPUD1-204ENST00000439977 MROH2BQ7Z745 1585 aa21.62■■□□□ 1.05
HERPUD1-204ENST00000439977 NACADO15069 1562 aa21.59■■□□□ 1.05
HERPUD1-204ENST00000439977 WIZO95785 1651 aa21.47■■□□□ 1.03
HERPUD1-204ENST00000439977 TTBK1Q5TCY1 1321 aaPredicted RBP21.21■□□□□ 0.99
HERPUD1-204ENST00000439977 BAZ1AQ9NRL2 1556 aaPredicted RBP21.2■□□□□ 0.98
HERPUD1-204ENST00000439977 PABPN1Q86U42 306 aaKnown RBP eCLIP21.2■□□□□ 0.98
HERPUD1-204ENST00000439977 ZEB1P37275 1124 aaPredicted RBP21.19■□□□□ 0.98
HERPUD1-204ENST00000439977 ABCC8Q09428 1581 aa21.12■□□□□ 0.97
HERPUD1-204ENST00000439977 CCDC88BA6NC98 1476 aa21.09■□□□□ 0.97
HERPUD1-204ENST00000439977 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.08■□□□□ 0.97
HERPUD1-204ENST00000439977 EIF4G1Q04637 1599 aaKnown RBP21.02■□□□□ 0.96
HERPUD1-204ENST00000439977 TOP2AP11388 1531 aaKnown RBP21.01■□□□□ 0.95
HERPUD1-204ENST00000439977 SMARCA4P51532 1647 aa21.01■□□□□ 0.95
HERPUD1-204ENST00000439977 SOGA1O94964 1423 aa20.99■□□□□ 0.95
HERPUD1-204ENST00000439977 CCER1Q8TC90 406 aaPredicted RBP20.97■□□□□ 0.95
HERPUD1-204ENST00000439977 SMARCA2P51531 1590 aa20.95■□□□□ 0.94
HERPUD1-204ENST00000439977 UBTFP17480 764 aaKnown RBP20.94■□□□□ 0.94
HERPUD1-204ENST00000439977 RUSC2Q8N2Y8 1516 aa20.9■□□□□ 0.94
HERPUD1-204ENST00000439977 UNC13AQ9UPW8 1703 aa20.89■□□□□ 0.93
HERPUD1-204ENST00000439977 CSRNP3Q8WYN3 585 aa20.88■□□□□ 0.93
HERPUD1-204ENST00000439977 CEP162Q5TB80 1403 aa20.85■□□□□ 0.93
HERPUD1-204ENST00000439977 RANGAP1P46060 587 aaPredicted RBP20.74■□□□□ 0.91
HERPUD1-204ENST00000439977 TNIKQ9UKE5 1360 aa20.74■□□□□ 0.91
HERPUD1-204ENST00000439977 BICRAQ9NZM4 1560 aa20.73■□□□□ 0.91
HERPUD1-204ENST00000439977 WRNQ14191 1432 aaPredicted RBP eCLIP20.7■□□□□ 0.9
HERPUD1-204ENST00000439977 SCAF1Q9H7N4 1312 aaKnown RBP20.63■□□□□ 0.89
HERPUD1-204ENST00000439977 EEA1Q15075 1411 aa20.61■□□□□ 0.89
HERPUD1-204ENST00000439977 GOLGA3Q08378 1498 aa20.59■□□□□ 0.89
HERPUD1-204ENST00000439977 HNRNPUL2Q1KMD3 747 aaKnown RBP20.58■□□□□ 0.88
HERPUD1-204ENST00000439977 ATAD2BQ9ULI0 1458 aa20.56■□□□□ 0.88
HERPUD1-204ENST00000439977 SYNJ1O43426 1573 aa20.54■□□□□ 0.88
HERPUD1-204ENST00000439977 DIEXFQ68CQ4 756 aaKnown RBP20.54■□□□□ 0.88
HERPUD1-204ENST00000439977 BAZ1BQ9UIG0 1483 aaKnown RBP20.53■□□□□ 0.88
HERPUD1-204ENST00000439977 PEG3Q9GZU2 1588 aa20.48■□□□□ 0.87
HERPUD1-204ENST00000439977 CLIP1P30622 1438 aa20.46■□□□□ 0.87
HERPUD1-204ENST00000439977 CEP164Q9UPV0 1460 aa20.45■□□□□ 0.86
HERPUD1-204ENST00000439977 APLP2Q06481 763 aa20.42■□□□□ 0.86
HERPUD1-204ENST00000439977 RAPGEF2Q9Y4G8 1499 aa20.42■□□□□ 0.86
HERPUD1-204ENST00000439977 NEUROD1Q13562 356 aa20.41■□□□□ 0.86
HERPUD1-204ENST00000439977 ACIN1Q9UKV3 1341 aaKnown RBP20.35■□□□□ 0.85
HERPUD1-204ENST00000439977 ZNF316A6NFI3 1004 aaPredicted RBP20.3■□□□□ 0.84
HERPUD1-204ENST00000439977 VPS8Q8N3P4 1428 aa20.3■□□□□ 0.84
HERPUD1-204ENST00000439977 KIF21BO75037 1637 aa20.3■□□□□ 0.84
HERPUD1-204ENST00000439977 YTHDC1Q96MU7 727 aaKnown RBP20.25■□□□□ 0.83
HERPUD1-204ENST00000439977 GTF3C3Q9Y5Q9 886 aa20.22■□□□□ 0.83
HERPUD1-204ENST00000439977 CENPBP07199 599 aaPredicted RBP20.19■□□□□ 0.82
HERPUD1-204ENST00000439977 KANK4Q5T7N3 995 aaPredicted RBP20.19■□□□□ 0.82
HERPUD1-204ENST00000439977 TOP2BQ02880 1626 aa20.18■□□□□ 0.82
HERPUD1-204ENST00000439977 MIER1Q8N108 512 aa20.13■□□□□ 0.81
HERPUD1-204ENST00000439977 ITGAEP38570 1179 aa20.09■□□□□ 0.81
HERPUD1-204ENST00000439977 PRXQ9BXM0 1461 aa20.09■□□□□ 0.81
HERPUD1-204ENST00000439977 CUX1P39880 1505 aa20.08■□□□□ 0.81
HERPUD1-204ENST00000439977 NCAPD3P42695 1498 aa20.08■□□□□ 0.8
HERPUD1-204ENST00000439977 ARAP1Q96P48 1450 aa20.05■□□□□ 0.8
HERPUD1-204ENST00000439977 KIF27Q86VH2 1401 aa20.04■□□□□ 0.8
HERPUD1-204ENST00000439977 BIVM-ERCC5R4GMW8 1640 aa20.02■□□□□ 0.8
HERPUD1-204ENST00000439977 PELP1Q8IZL8 1130 aaKnown RBP19.97■□□□□ 0.79
HERPUD1-204ENST00000439977 HMGXB3Q12766 1538 aa19.97■□□□□ 0.79
HERPUD1-204ENST00000439977 CFTRP13569 1480 aa19.97■□□□□ 0.79
HERPUD1-204ENST00000439977 ERICH3Q5RHP9 1530 aa19.96■□□□□ 0.79
HERPUD1-204ENST00000439977 DHX57Q6P158 1386 aaKnown RBP19.94■□□□□ 0.78
HERPUD1-204ENST00000439977 P3H3Q8IVL6 736 aa19.91■□□□□ 0.78
HERPUD1-204ENST00000439977 ATP1B4Q9UN42 357 aaPredicted RBP19.9■□□□□ 0.78
HERPUD1-204ENST00000439977 CUX2O14529 1486 aa19.9■□□□□ 0.78
HERPUD1-204ENST00000439977 ARHGAP35Q9NRY4 1499 aa19.89■□□□□ 0.77
HERPUD1-204ENST00000439977 IGF1RP08069 1367 aa19.87■□□□□ 0.77
HERPUD1-204ENST00000439977 CCNB3Q8WWL7 1395 aa19.83■□□□□ 0.76
HERPUD1-204ENST00000439977 CADPSQ9ULU8 1353 aa19.81■□□□□ 0.76
HERPUD1-204ENST00000439977 CARMIL1Q5VZK9 1371 aa19.8■□□□□ 0.76
HERPUD1-204ENST00000439977 RRBP1Q9P2E9 1410 aaKnown RBP19.79■□□□□ 0.76
HERPUD1-204ENST00000439977 CLSPNQ9HAW4 1339 aa19.76■□□□□ 0.75
HERPUD1-204ENST00000439977 FAM50AQ14320 339 aaKnown RBP19.76■□□□□ 0.75
HERPUD1-204ENST00000439977 FGD5Q6ZNL6 1462 aa19.75■□□□□ 0.75
HERPUD1-204ENST00000439977 RAB3GAP2Q9H2M9 1393 aa19.7■□□□□ 0.74
HERPUD1-204ENST00000439977 PHLDB1Q86UU1 1377 aa19.66■□□□□ 0.74
HERPUD1-204ENST00000439977 RAD54L2Q9Y4B4 1467 aa19.65■□□□□ 0.74
HERPUD1-204ENST00000439977 SIN3AQ96ST3 1273 aa19.65■□□□□ 0.74
HERPUD1-204ENST00000439977 FANCD2Q9BXW9 1451 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms