RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 NISCHQ9Y2I1 1504 aa47.14■■■■■ 5.14
UPF3A-211ENST00000618700 AEBP2Q6ZN18 517 aaPredicted RBP44.01■■■■■ 4.64
UPF3A-211ENST00000618700 CHIC1Q5VXU3 224 aa42.65■■■■■ 4.42
UPF3A-211ENST00000618700 CCDC180Q9P1Z9 1646 aa41.7■■■■■ 4.27
UPF3A-211ENST00000618700 ABCC9O60706 1549 aa40.21■■■■■ 4.03
UPF3A-211ENST00000618700 ZCCHC6Q5VYS8 1495 aaKnown RBP39.42■■■■□ 3.9
UPF3A-211ENST00000618700 DCAF1Q9Y4B6 1507 aa39.07■■■■□ 3.84
UPF3A-211ENST00000618700 NACADO15069 1562 aa39.05■■■■□ 3.84
UPF3A-211ENST00000618700 MYO15BQ96JP2 1530 aa39.04■■■■□ 3.84
UPF3A-211ENST00000618700 DCAF8L2P0C7V8 631 aa38.97■■■■□ 3.83
UPF3A-211ENST00000618700 RB1CC1Q8TDY2 1594 aa38.95■■■■□ 3.83
UPF3A-211ENST00000618700 UNC13AQ9UPW8 1703 aa38.1■■■■□ 3.69
UPF3A-211ENST00000618700 SCRIBQ14160 1630 aa38.05■■■■□ 3.68
UPF3A-211ENST00000618700 BICRAQ9NZM4 1560 aa37.8■■■■□ 3.64
UPF3A-211ENST00000618700 PABPN1Q86U42 306 aaKnown RBP eCLIP37.62■■■■□ 3.61
UPF3A-211ENST00000618700 PHF23Q9BUL5 403 aaPredicted RBP37.53■■■■□ 3.6
UPF3A-211ENST00000618700 SHROOM4Q9ULL8 1493 aa37.47■■■■□ 3.59
UPF3A-211ENST00000618700 SENP3Q9H4L4 574 aaPredicted RBP37.31■■■■□ 3.56
UPF3A-211ENST00000618700 DNAJC5BQ9UF47 199 aa36.96■■■■□ 3.51
UPF3A-211ENST00000618700 EIF4G1Q04637 1599 aaKnown RBP36.74■■■■□ 3.47
UPF3A-211ENST00000618700 CECR2Q9BXF3 1484 aa36.65■■■■□ 3.46
UPF3A-211ENST00000618700 BAZ1AQ9NRL2 1556 aaPredicted RBP36.49■■■■□ 3.43
UPF3A-211ENST00000618700 SMARCA4P51532 1647 aa36.48■■■■□ 3.43
UPF3A-211ENST00000618700 CC2D2AQ9P2K1 1620 aa36.44■■■■□ 3.42
UPF3A-211ENST00000618700 MROH2BQ7Z745 1585 aa36.34■■■■□ 3.41
UPF3A-211ENST00000618700 PEG3Q9GZU2 1588 aa36.14■■■■□ 3.38
UPF3A-211ENST00000618700 ATAD2BQ9ULI0 1458 aa36.12■■■■□ 3.37
UPF3A-211ENST00000618700 RSF1Q96T23 1441 aaPredicted RBP36.11■■■■□ 3.37
UPF3A-211ENST00000618700 SMARCA2P51531 1590 aa36.1■■■■□ 3.37
UPF3A-211ENST00000618700 NCAPD3P42695 1498 aa36.03■■■■□ 3.36
UPF3A-211ENST00000618700 WIZO95785 1651 aa35.96■■■■□ 3.35
UPF3A-211ENST00000618700 HMGXB3Q12766 1538 aa35.93■■■■□ 3.34
UPF3A-211ENST00000618700 BAZ1BQ9UIG0 1483 aaKnown RBP35.84■■■■□ 3.33
UPF3A-211ENST00000618700 TOP2AP11388 1531 aaKnown RBP35.64■■■■□ 3.3
UPF3A-211ENST00000618700 SUPT5HO00267 1087 aaKnown RBP35.46■■■■□ 3.27
UPF3A-211ENST00000618700 CCDC88BA6NC98 1476 aa35.17■■■■□ 3.22
UPF3A-211ENST00000618700 LAMC3Q9Y6N6 1575 aa35■■■■□ 3.19
UPF3A-211ENST00000618700 NESP48681 1621 aa34.98■■■■□ 3.19
UPF3A-211ENST00000618700 CADPSQ9ULU8 1353 aa34.98■■■■□ 3.19
UPF3A-211ENST00000618700 CFTRP13569 1480 aa34.92■■■■□ 3.18
UPF3A-211ENST00000618700 FOXD1Q16676 465 aa34.72■■■■□ 3.15
UPF3A-211ENST00000618700 PRDM2Q13029 1718 aa34.71■■■■□ 3.15
UPF3A-211ENST00000618700 PDS5BQ9NTI5 1447 aa34.7■■■■□ 3.15
UPF3A-211ENST00000618700 ERCC6Q03468 1493 aa34.66■■■■□ 3.14
UPF3A-211ENST00000618700 KIF21AQ7Z4S6 1674 aa34.6■■■■□ 3.13
UPF3A-211ENST00000618700 FANCD2Q9BXW9 1451 aa34.58■■■■□ 3.13
UPF3A-211ENST00000618700 CEP164Q9UPV0 1460 aa34.5■■■■□ 3.11
UPF3A-211ENST00000618700 PLPPR3Q6T4P5 718 aa34.48■■■■□ 3.11
UPF3A-211ENST00000618700 CUX2O14529 1486 aa34.39■■■■□ 3.1
UPF3A-211ENST00000618700 THOC2Q8NI27 1593 aaKnown RBP34.39■■■■□ 3.1
UPF3A-211ENST00000618700 MRC2Q9UBG0 1479 aa34.34■■■■□ 3.09
UPF3A-211ENST00000618700 WDR62O43379 1518 aa34.25■■■■□ 3.07
UPF3A-211ENST00000618700 URB2Q14146 1524 aaKnown RBP34.23■■■■□ 3.07
UPF3A-211ENST00000618700 DNMBPQ6XZF7 1577 aa34.13■■■■□ 3.05
UPF3A-211ENST00000618700 ABCC8Q09428 1581 aa34.11■■■■□ 3.05
UPF3A-211ENST00000618700 TOPBP1Q92547 1522 aa34.1■■■■□ 3.05
UPF3A-211ENST00000618700 CUX1P39880 1505 aa34.07■■■■□ 3.04
UPF3A-211ENST00000618700 WRNQ14191 1432 aaPredicted RBP eCLIP34.01■■■■□ 3.03
UPF3A-211ENST00000618700 SYNJ1O43426 1573 aa33.94■■■■□ 3.02
UPF3A-211ENST00000618700 TOP2BQ02880 1626 aa33.92■■■■□ 3.02
UPF3A-211ENST00000618700 BIVM-ERCC5R4GMW8 1640 aa33.92■■■■□ 3.02
UPF3A-211ENST00000618700 POLA1P09884 1462 aaPredicted RBP33.87■■■■□ 3.01
UPF3A-211ENST00000618700 FGD5Q6ZNL6 1462 aa33.84■■■■□ 3.01
UPF3A-211ENST00000618700 IFT140Q96RY7 1462 aa33.76■■■□□ 2.99
UPF3A-211ENST00000618700 TARBP1Q13395 1621 aaKnown RBP33.72■■■□□ 2.99
UPF3A-211ENST00000618700 SOGA1O94964 1423 aa33.68■■■□□ 2.98
UPF3A-211ENST00000618700 RAD54L2Q9Y4B4 1467 aa33.68■■■□□ 2.98
UPF3A-211ENST00000618700 WDR97A6NE52 1622 aa33.6■■■□□ 2.97
UPF3A-211ENST00000618700 ABCA10Q8WWZ4 1543 aa33.56■■■□□ 2.96
UPF3A-211ENST00000618700 ZNF608Q9ULD9 1512 aaPredicted RBP33.55■■■□□ 2.96
UPF3A-211ENST00000618700 EIF4G3O43432 1585 aaKnown RBP33.47■■■□□ 2.95
UPF3A-211ENST00000618700 TRIM41Q8WV44 630 aa33.47■■■□□ 2.95
UPF3A-211ENST00000618700 TDRD9Q8NDG6 1382 aaKnown RBP33.42■■■□□ 2.94
UPF3A-211ENST00000618700 ABCA5Q8WWZ7 1642 aa33.41■■■□□ 2.94
UPF3A-211ENST00000618700 AQRO60306 1485 aaKnown RBP eCLIP33.4■■■□□ 2.94
UPF3A-211ENST00000618700 DNAJC5Q9H3Z4 198 aa33.38■■■□□ 2.93
UPF3A-211ENST00000618700 GAPVD1Q14C86 1478 aa33.32■■■□□ 2.92
UPF3A-211ENST00000618700 GRIN2BQ13224 1484 aa33.25■■■□□ 2.91
UPF3A-211ENST00000618700 PBRM1Q86U86 1689 aa33.25■■■□□ 2.91
UPF3A-211ENST00000618700 KIF27Q86VH2 1401 aa33.25■■■□□ 2.91
UPF3A-211ENST00000618700 PPP6R1Q9UPN7 881 aa33.23■■■□□ 2.91
UPF3A-211ENST00000618700 ADRA2BP18089 450 aa33.18■■■□□ 2.9
UPF3A-211ENST00000618700 ERICH3Q5RHP9 1530 aa33.17■■■□□ 2.9
UPF3A-211ENST00000618700 SNAPC4Q5SXM2 1469 aa33.15■■■□□ 2.9
UPF3A-211ENST00000618700 MAGI1Q96QZ7 1491 aaPredicted RBP33.13■■■□□ 2.89
UPF3A-211ENST00000618700 RUSC2Q8N2Y8 1516 aa33.12■■■□□ 2.89
UPF3A-211ENST00000618700 IGF1RP08069 1367 aa33.05■■■□□ 2.88
UPF3A-211ENST00000618700 ADAMTS12P58397 1594 aa33.04■■■□□ 2.88
UPF3A-211ENST00000618700 EEA1Q15075 1411 aa32.99■■■□□ 2.87
UPF3A-211ENST00000618700 SYNJ2O15056 1496 aa32.98■■■□□ 2.87
UPF3A-211ENST00000618700 CUL7Q14999 1698 aa32.97■■■□□ 2.87
UPF3A-211ENST00000618700 FHAD1B1AJZ9 1412 aa32.97■■■□□ 2.87
UPF3A-211ENST00000618700 CHD1O14646 1710 aa32.93■■■□□ 2.86
UPF3A-211ENST00000618700 CARMIL1Q5VZK9 1371 aa32.85■■■□□ 2.85
UPF3A-211ENST00000618700 GRIN2AQ12879 1464 aa32.84■■■□□ 2.85
UPF3A-211ENST00000618700 CHMP7Q8WUX9 453 aaPredicted RBP32.83■■■□□ 2.85
UPF3A-211ENST00000618700 OSCARQ8IYS5 282 aa32.82■■■□□ 2.84
UPF3A-211ENST00000618700 FBLN2P98095 1184 aa32.8■■■□□ 2.84
UPF3A-211ENST00000618700 CSRNP3Q8WYN3 585 aa32.79■■■□□ 2.84
UPF3A-211ENST00000618700 PRXQ9BXM0 1461 aa32.79■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms