Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 MICAL2-231ENST00000537344 3774 ntAPPRIS P3 TSL 5 BASIC10.48□□□□□ -0.735e-6■■■■■ 155.1
SF3B1O75533 DLST-204ENST00000554612 1479 ntTSL 210.45□□□□□ -0.748e-9■■■■■ 155.1
SF3B1O75533 PPP1R3E-204ENST00000559942 1187 ntTSL 1 (best)10.42□□□□□ -0.742e-6■■■■■ 155.1
SF3B1O75533 ADAM9-201ENST00000379917 3836 ntTSL 1 (best)10.41□□□□□ -0.748e-9■■■■■ 155.1
SF3B1O75533 IL10RB-204ENST00000493295 1991 ntTSL 210.3□□□□□ -0.767e-8■■■■■ 155.1
SF3B1O75533 ADAM9-209ENST00000487273 3839 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.768e-9■■■■■ 155.1
SF3B1O75533 PPHLN1-203ENST00000337898 1465 ntTSL 2 BASIC10.25□□□□□ -0.773e-8■■■■■ 155.1
SF3B1O75533 DMD-206ENST00000361471 2224 ntTSL 1 (best) BASIC10.19□□□□□ -0.782e-6■■■■■ 155.1
SF3B1O75533 GOSR1-203ENST00000427274 1204 ntTSL 210.12□□□□□ -0.796e-13■■■■■ 155.1
SF3B1O75533 KPNA2-201ENST00000330459 2181 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.815e-8■■■■■ 155.1
SF3B1O75533 DDX10-203ENST00000526794 6707 ntTSL 1 (best) BASIC9.92□□□□□ -0.822e-6■■■■■ 155.1
SF3B1O75533 ADAM9-207ENST00000481873 3793 ntTSL 1 (best)9.91□□□□□ -0.828e-9■■■■■ 155.1
SF3B1O75533 MICAL2-217ENST00000527546 3358 ntTSL 5 BASIC9.83□□□□□ -0.845e-6■■■■■ 155.1
SF3B1O75533 DLST-213ENST00000556460 563 ntTSL 39.79□□□□□ -0.848e-9■■■■■ 155.1
SF3B1O75533 DMD-212ENST00000378723 4645 ntTSL 1 (best) BASIC9.78□□□□□ -0.842e-6■■■■■ 155.1
SF3B1O75533 CBFA2T2-210ENST00000543126 3502 ntTSL 1 (best) BASIC9.71□□□□□ -0.866e-13■■■■■ 155.1
SF3B1O75533 FBXW7-207ENST00000603841 2261 ntAPPRIS P4 TSL 1 (best) BASIC9.69□□□□□ -0.868e-9■■■■■ 155.1
SF3B1O75533 DLST-205ENST00000554806 837 ntTSL 1 (best)9.56□□□□□ -0.888e-9■■■■■ 155.1
SF3B1O75533 AMD1-201ENST00000368876 3040 ntTSL 5 BASIC9.56□□□□□ -0.882e-6■■■■■ 155.1
SF3B1O75533 DLST-207ENST00000555089 1078 ntTSL 1 (best)9.55□□□□□ -0.888e-9■■■■■ 155.1
SF3B1O75533 ADAM9-204ENST00000468065 3755 ntTSL 1 (best)9.47□□□□□ -0.898e-9■■■■■ 155.1
SF3B1O75533 GOSR1-204ENST00000451249 1231 ntAPPRIS ALT1 TSL 2 BASIC9.45□□□□□ -0.96e-13■■■■■ 155.1
SF3B1O75533 ITGA2B-202ENST00000587295 496 ntTSL 39.28□□□□□ -0.928e-9■■■■■ 155.1
SF3B1O75533 SH2D3A-203ENST00000595369 3493 ntTSL 29.23□□□□□ -0.936e-13■■■■■ 155.1
SF3B1O75533 AMD1-202ENST00000368877 1605 ntTSL 2 BASIC9.17□□□□□ -0.948e-7■■■■■ 155.1
SF3B1O75533 GOSR1-212ENST00000581721 756 ntTSL 5 BASIC9.11□□□□□ -0.956e-13■■■■■ 155.1
SF3B1O75533 MICAL2-202ENST00000342902 3711 ntAPPRIS ALT2 TSL 2 BASIC8.93□□□□□ -0.985e-6■■■■■ 155.1
SF3B1O75533 ODF2-218ENST00000497812 578 ntTSL 48.8□□□□□ -18e-9■■■■■ 155.1
SF3B1O75533 DLST-216ENST00000626051 252 ntTSL 5 BASIC8.37□□□□□ -1.078e-9■■■■■ 155.1
SF3B1O75533 CEP85L-210ENST00000483035 1585 ntTSL 28.37□□□□□ -1.078e-9■■■■■ 155.1
SF3B1O75533 ZNRD1ASP-211ENST00000376797 3270 ntTSL 2 BASIC8.09□□□□□ -1.118e-9■■■■■ 155.1
SF3B1O75533 NUMB-231ENST00000559312 1439 ntTSL 1 (best) BASIC8.06□□□□□ -1.128e-9■■■■■ 155.1
SF3B1O75533 PPHLN1-202ENST00000317560 1359 ntTSL 2 BASIC7.93□□□□□ -1.143e-8■■■■■ 155.1
SF3B1O75533 AC025171.1-203ENST00000503152 608 ntTSL 27.91□□□□□ -1.146e-13■■■■■ 155.1
SF3B1O75533 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC7.84□□□□□ -1.153e-8■■■■■ 155.1
SF3B1O75533 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.178e-9■■■■■ 155.1
SF3B1O75533 NUMB-211ENST00000554521 1406 ntTSL 1 (best) BASIC7.71□□□□□ -1.188e-9■■■■■ 155.1
SF3B1O75533 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.212e-6■■■■■ 155.1
SF3B1O75533 LINC00843-201ENST00000429104 562 ntTSL 57.48□□□□□ -1.212e-6■■■■■ 155.1
SF3B1O75533 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC7.42□□□□□ -1.228e-9■■■■■ 155.1
SF3B1O75533 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC7.42□□□□□ -1.228e-9■■■■■ 155.1
SF3B1O75533 ZNRD1ASP-218ENST00000444051 9771 ntTSL 1 (best)7.23□□□□□ -1.258e-9■■■■■ 155.1
SF3B1O75533 DMD-204ENST00000358062 6773 ntTSL 57.14□□□□□ -1.272e-6■■■■■ 155.1
SF3B1O75533 DMD-211ENST00000378707 7410 ntTSL 5 BASIC7.11□□□□□ -1.272e-6■■■■■ 155.1
SF3B1O75533 DHX57-206ENST00000479345 1835 ntTSL 27.02□□□□□ -1.298e-9■■■■■ 155.1
SF3B1O75533 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC6.93□□□□□ -1.33e-8■■■■■ 155.1
SF3B1O75533 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.92□□□□□ -1.38e-7■■■■■ 155.1
SF3B1O75533 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.87□□□□□ -1.318e-9■■■■■ 155.1
SF3B1O75533 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.65□□□□□ -1.352e-6■■■■■ 155.1
SF3B1O75533 UGP2-222ENST00000491621 753 ntTSL 36.6□□□□□ -1.352e-6■■■■■ 155.1
SF3B1O75533 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.6□□□□□ -1.352e-6■■■■■ 155.1
SF3B1O75533 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.42□□□□□ -1.382e-6■■■■■ 155.1
SF3B1O75533 NUMB-218ENST00000555859 906 ntTSL 26.41□□□□□ -1.388e-9■■■■■ 155.1
SF3B1O75533 AMD1-205ENST00000451850 3121 ntTSL 1 (best)6.37□□□□□ -1.398e-7■■■■■ 155.1
SF3B1O75533 RNF216-207ENST00000476345 546 ntTSL 56.25□□□□□ -1.418e-9■■■■■ 155.1
SF3B1O75533 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC6.12□□□□□ -1.438e-9■■■■■ 155.1
SF3B1O75533 CEP85L-206ENST00000434604 1797 ntTSL 1 (best)6.09□□□□□ -1.438e-9■■■■■ 155.1
SF3B1O75533 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.462e-6■■■■■ 155.1
SF3B1O75533 IL10RB-207ENST00000637650 2132 ntTSL 55.79□□□□□ -1.487e-8■■■■■ 155.1
SF3B1O75533 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.58e-7■■■■■ 155.1
SF3B1O75533 GOSR1-210ENST00000537788 582 ntTSL 35.15□□□□□ -1.596e-13■■■■■ 155.1
SF3B1O75533 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.04□□□□□ -1.68e-9■■■■■ 155.1
SF3B1O75533 PPP1R3E-205ENST00000560073 444 ntTSL 54.78□□□□□ -1.642e-6■■■■■ 155.1
SF3B1O75533 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.662e-6■■■■■ 155.1
SF3B1O75533 CBX5-203ENST00000547872 745 ntTSL 24.5□□□□□ -1.692e-6■■■■■ 155.1
SF3B1O75533 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.72e-6■■■■■ 155.1
SF3B1O75533 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.72e-6■■■■■ 155.1
SF3B1O75533 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.47□□□□□ -1.858e-9■■■■■ 155.1
SF3B1O75533 CHD2-228ENST00000637613 986 ntTSL 53.26□□□□□ -1.898e-9■■■■■ 155.1
SF3B1O75533 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.892e-6■■■■■ 155.1
SF3B1O75533 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.93e-8■■■■■ 155.1
SF3B1O75533 GOSR1-206ENST00000467635 584 ntTSL 23.08□□□□□ -1.926e-13■■■■■ 155.1
SF3B1O75533 ORC5-206ENST00000477223 780 ntTSL 22.78□□□□□ -1.967e-8■■■■■ 155.1
SF3B1O75533 RC3H1-205ENST00000484867 368 ntTSL 32.72□□□□□ -1.978e-9■■■■■ 155.1
SF3B1O75533 SRSF11-208ENST00000463859 1035 ntTSL 52.44□□□□□ -2.022e-6■■■■■ 155.1
SF3B1O75533 CHD2-203ENST00000625243 361 ntTSL 1 (best)1.89□□□□□ -2.118e-9■■■■■ 155.1
SF3B1O75533 KIAA1551-202ENST00000381054 2326 ntTSL 51.1□□□□□ -2.238e-9■■■■■ 155.1
SF3B1O75533 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.53□□□□□ -0.083e-6■■■■■ 155
SF3B1O75533 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC13.85□□□□□ -0.193e-6■■■■■ 155
SF3B1O75533 ACTN1-202ENST00000376839 2824 ntTSL 2 BASIC13.56□□□□□ -0.243e-6■■■■■ 155
SF3B1O75533 ACTN1-201ENST00000193403 3779 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.583e-6■■■■■ 155
SF3B1O75533 ACTN1-203ENST00000394419 3464 ntAPPRIS ALT1 TSL 1 (best) BASIC10.63□□□□□ -0.713e-6■■■■■ 155
SF3B1O75533 DOCK8-201ENST00000382329 6124 ntTSL 1 (best) BASIC11.71□□□□□ -0.541e-6■■■■■ 154.9
SF3B1O75533 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.723e-6■■■■■ 154.8
SF3B1O75533 PLCB1-219ENST00000630495 759 ntTSL 58.97□□□□□ -0.971e-6■■■■■ 154.7
SF3B1O75533 PLCB1-212ENST00000625874 3206 ntTSL 27.81□□□□□ -1.161e-6■■■■■ 154.7
SF3B1O75533 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.48□□□□□ -1.691e-6■■■■■ 154.7
SF3B1O75533 AGAP1-209ENST00000453371 2138 ntTSL 518.52■□□□□ 0.557e-7■■■■■ 154.6
SF3B1O75533 AGAP1-210ENST00000466575 541 ntTSL 316.34■□□□□ 0.217e-7■■■■■ 154.6
SF3B1O75533 RPS6KA3-202ENST00000438357 530 ntTSL 516.43■□□□□ 0.224e-6■■■■■ 154.6
SF3B1O75533 RPS6KA3-206ENST00000492128 553 ntTSL 410.73□□□□□ -0.694e-6■■■■■ 154.6
SF3B1O75533 SLC26A6-206ENST00000414944 724 ntTSL 319.21■□□□□ 0.673e-6■■■■■ 154.6
SF3B1O75533 SLC26A6-212ENST00000444531 806 ntTSL 316.67■□□□□ 0.263e-6■■■■■ 154.6
SF3B1O75533 SLC26A6-208ENST00000421649 910 ntTSL 316.42■□□□□ 0.223e-6■■■■■ 154.6
SF3B1O75533 SGK494-209ENST00000530121 581 ntTSL 312.58□□□□□ -0.43e-6■■■■■ 154.4
SF3B1O75533 SGK494-208ENST00000527918 632 ntTSL 211.77□□□□□ -0.533e-6■■■■■ 154.4
SF3B1O75533 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.72e-6■■■■■ 154.3
SF3B1O75533 RNPEPL1-203ENST00000451363 538 ntTSL 416.29■□□□□ 0.22e-6■■■■■ 154.3
SF3B1O75533 RNPEPL1-208ENST00000486058 3126 ntTSL 215.46■□□□□ 0.072e-6■■■■■ 154.3
SF3B1O75533 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.247e-7■■■■■ 154.3
Retrieved 100 of 46,956 protein–RNA pairs in 1540.3 ms