RNA–Protein interactions for RNA: ENST00000637613.1

CHD2-228, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 5

Gene CHD2, Length 986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-228ENST00000637613 AEBP2Q6ZN18 517 aaPredicted RBP22.15■■□□□ 1.14
CHD2-228ENST00000637613 CHIC1Q5VXU3 224 aa20.73■□□□□ 0.91
CHD2-228ENST00000637613 SENP3Q9H4L4 574 aaPredicted RBP19.04■□□□□ 0.64
CHD2-228ENST00000637613 PHF23Q9BUL5 403 aaPredicted RBP18.67■□□□□ 0.58
CHD2-228ENST00000637613 FOXD1Q16676 465 aa17.79■□□□□ 0.44
CHD2-228ENST00000637613 POTEDQ86YR6 584 aa17.6■□□□□ 0.41
CHD2-228ENST00000637613 MSH5O43196 834 aa16.94■□□□□ 0.3
CHD2-228ENST00000637613 PIAS4Q8N2W9 510 aaPredicted RBP16.47■□□□□ 0.23
CHD2-228ENST00000637613 PPP6R1Q9UPN7 881 aa16.12■□□□□ 0.17
CHD2-228ENST00000637613 PLPPR3Q6T4P5 718 aa16.05■□□□□ 0.16
CHD2-228ENST00000637613 ADRA2BP18089 450 aa16.02■□□□□ 0.16
CHD2-228ENST00000637613 DMRT2Q9Y5R5 561 aa14.99□□□□□ -0.01
CHD2-228ENST00000637613 MAPK8IP2Q13387 824 aaPredicted RBP14.91□□□□□ -0.02
CHD2-228ENST00000637613 CACNB1Q02641 598 aaPredicted RBP14.9□□□□□ -0.02
CHD2-228ENST00000637613 SCAF1Q9H7N4 1312 aaKnown RBP14.72□□□□□ -0.05
CHD2-228ENST00000637613 RNF39Q9H2S5 420 aa14.39□□□□□ -0.11
CHD2-228ENST00000637613 DCAF8L1A6NGE4 600 aa14.36□□□□□ -0.11
CHD2-228ENST00000637613 HOXD11P31277 338 aaPredicted RBP14.2□□□□□ -0.14
CHD2-228ENST00000637613 C1QBPQ07021 282 aaKnown RBP14.15□□□□□ -0.14
CHD2-228ENST00000637613 PPP4R3CPQ6ZMV5 832 aa13.95□□□□□ -0.18
CHD2-228ENST00000637613 RNF216Q9NWF9 866 aaPredicted RBP13.91□□□□□ -0.18
CHD2-228ENST00000637613 DNAJC5BQ9UF47 199 aa13.89□□□□□ -0.19
CHD2-228ENST00000637613 CNKSR2Q8WXI2 1034 aa13.87□□□□□ -0.19
CHD2-228ENST00000637613 POTEHQ6S545 545 aa13.67□□□□□ -0.22
CHD2-228ENST00000637613 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.49□□□□□ -0.252e-11■■□□□ 13
CHD2-228ENST00000637613 NCBP3Q53F19 620 aaKnown RBP13.25□□□□□ -0.29
CHD2-228ENST00000637613 DSG3P32926 999 aa13.24□□□□□ -0.29
CHD2-228ENST00000637613 CAPN15O75808 1086 aa13.14□□□□□ -0.31
CHD2-228ENST00000637613 U3KPZ7 1027 aaPredicted RBP13.14□□□□□ -0.31
CHD2-228ENST00000637613 SPINK5Q9NQ38 1064 aaPredicted RBP13.12□□□□□ -0.31
CHD2-228ENST00000637613 NPM3O75607 178 aaKnown RBP13.03□□□□□ -0.32
CHD2-228ENST00000637613 ZNF219Q9P2Y4 722 aaPredicted RBP12.77□□□□□ -0.37
CHD2-228ENST00000637613 ABCB7O75027 752 aa12.76□□□□□ -0.37
CHD2-228ENST00000637613 TRHP20396 242 aaPredicted RBP12.76□□□□□ -0.37
CHD2-228ENST00000637613 APLP2Q06481 763 aa12.75□□□□□ -0.37
CHD2-228ENST00000637613 RBM42Q9BTD8 480 aaKnown RBP12.68□□□□□ -0.38
CHD2-228ENST00000637613 CHRDL2Q6WN34 429 aa12.63□□□□□ -0.39
CHD2-228ENST00000637613 SLC4A2P04920 1241 aa12.61□□□□□ -0.39
CHD2-228ENST00000637613 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.58□□□□□ -0.4
CHD2-228ENST00000637613 HNRNPUL2Q1KMD3 747 aaKnown RBP12.58□□□□□ -0.4
CHD2-228ENST00000637613 SP7Q8TDD2 431 aaPredicted RBP12.52□□□□□ -0.41
CHD2-228ENST00000637613 SAMD1Q6SPF0 538 aaPredicted RBP12.47□□□□□ -0.41
CHD2-228ENST00000637613 POLA2Q14181 598 aa12.29□□□□□ -0.44
CHD2-228ENST00000637613 AKT1S1Q96B36 256 aa12.24□□□□□ -0.45
CHD2-228ENST00000637613 KCNA4P22459 653 aa12.18□□□□□ -0.46
CHD2-228ENST00000637613 PIP4P2Q8N4L2 257 aa12.18□□□□□ -0.46
CHD2-228ENST00000637613 HAX1O00165 279 aa12.13□□□□□ -0.47
CHD2-228ENST00000637613 REM2Q8IYK8 340 aaPredicted RBP12.11□□□□□ -0.47
CHD2-228ENST00000637613 MYCNP04198 464 aaPredicted RBP12.09□□□□□ -0.47
CHD2-228ENST00000637613 ZBTB12Q9Y330 459 aaPredicted RBP12.04□□□□□ -0.48
CHD2-228ENST00000637613 FXR2P51116 673 aaKnown RBP eCLIP12.02□□□□□ -0.492e-7■■□□□ 11.7
CHD2-228ENST00000637613 PITPNM1O00562 1244 aa11.98□□□□□ -0.49
CHD2-228ENST00000637613 EVX2Q03828 476 aa11.92□□□□□ -0.5
CHD2-228ENST00000637613 OSCARQ8IYS5 282 aa11.92□□□□□ -0.5
CHD2-228ENST00000637613 ATF5Q9Y2D1 282 aaPredicted RBP11.82□□□□□ -0.52
CHD2-228ENST00000637613 LHX8Q68G74 356 aa11.73□□□□□ -0.53
CHD2-228ENST00000637613 C19orf67A6NJJ6 358 aa11.66□□□□□ -0.54
CHD2-228ENST00000637613 PRKAR2AP13861 404 aaKnown RBP11.66□□□□□ -0.54
CHD2-228ENST00000637613 GABBR2O75899 941 aa11.63□□□□□ -0.55
CHD2-228ENST00000637613 SPDYE2BA6NHP3 402 aa11.6□□□□□ -0.55
CHD2-228ENST00000637613 SPDYE6P0CI01 402 aa11.6□□□□□ -0.55
CHD2-228ENST00000637613 SPDYE2Q495Y8 402 aa11.6□□□□□ -0.55
CHD2-228ENST00000637613 FOXD4L1Q9NU39 408 aa11.6□□□□□ -0.55
CHD2-228ENST00000637613 SPDYE1Q8NFV5 336 aaPredicted RBP11.54□□□□□ -0.56
CHD2-228ENST00000637613 CLEC11AQ9Y240 323 aa11.52□□□□□ -0.57
CHD2-228ENST00000637613 PLSCR2Q9NRY7 297 aa11.48□□□□□ -0.57
CHD2-228ENST00000637613 FBLN2P98095 1184 aa11.44□□□□□ -0.58
CHD2-228ENST00000637613 SLC4A1APQ9BWU0 796 aaKnown RBP11.39□□□□□ -0.59
CHD2-228ENST00000637613 POTEIP0CG38 1075 aa11.38□□□□□ -0.59
CHD2-228ENST00000637613 SSUH2Q9Y2M2 353 aa11.37□□□□□ -0.59
CHD2-228ENST00000637613 CHADLQ6NUI6 762 aa11.36□□□□□ -0.59
CHD2-228ENST00000637613 ATXN8OSP0DMR3 200 aa11.35□□□□□ -0.59
CHD2-228ENST00000637613 ZNF692Q9BU19 519 aaPredicted RBP11.33□□□□□ -0.6
CHD2-228ENST00000637613 CLCN6P51797 869 aa11.3□□□□□ -0.6
CHD2-228ENST00000637613 PRR29P0C7W0 189 aa11.26□□□□□ -0.61
CHD2-228ENST00000637613 CD44P16070 742 aaKnown RBP11.25□□□□□ -0.61
CHD2-228ENST00000637613 MKRN4PQ13434 485 aaPredicted RBP11.25□□□□□ -0.61
CHD2-228ENST00000637613 ZBTB22O15209 634 aa11.19□□□□□ -0.62
CHD2-228ENST00000637613 DCBLD2Q96PD2 775 aa11.19□□□□□ -0.62
CHD2-228ENST00000637613 FARP1Q9Y4F1 1045 aaPredicted RBP11.16□□□□□ -0.62
CHD2-228ENST00000637613 PABPN1Q86U42 306 aaKnown RBP eCLIP11.14□□□□□ -0.63
CHD2-228ENST00000637613 OTUD5Q96G74 571 aa11.09□□□□□ -0.63
CHD2-228ENST00000637613 POTEMA6NI47 508 aa11.07□□□□□ -0.64
CHD2-228ENST00000637613 ZNF579Q8NAF0 562 aaKnown RBP11.07□□□□□ -0.64
CHD2-228ENST00000637613 POTEGQ6S5H5 508 aa11.01□□□□□ -0.65
CHD2-228ENST00000637613 POTEB2H3BUK9 544 aa10.98□□□□□ -0.65
CHD2-228ENST00000637613 PCDH10Q9P2E7 1040 aa10.98□□□□□ -0.65
CHD2-228ENST00000637613 ZRANB1Q9UGI0 708 aa10.98□□□□□ -0.65
CHD2-228ENST00000637613 GALR2O43603 387 aaPredicted RBP10.94□□□□□ -0.66
CHD2-228ENST00000637613 CREBZFQ9NS37 354 aa10.83□□□□□ -0.68
CHD2-228ENST00000637613 PELP1Q8IZL8 1130 aaKnown RBP10.8□□□□□ -0.68
CHD2-228ENST00000637613 PAK3O75914 559 aaPredicted RBP10.78□□□□□ -0.68
CHD2-228ENST00000637613 PHF12Q96QT6 1004 aa10.77□□□□□ -0.69
CHD2-228ENST00000637613 MAMSTRQ6ZN01 415 aa10.74□□□□□ -0.69
CHD2-228ENST00000637613 METRNQ9UJH8 293 aa10.74□□□□□ -0.69
CHD2-228ENST00000637613 STAG3Q9UJ98 1225 aa10.73□□□□□ -0.69
CHD2-228ENST00000637613 POTEJP0CG39 1038 aa10.72□□□□□ -0.69
CHD2-228ENST00000637613 LCE2DQ5TA82 110 aaPredicted RBP10.72□□□□□ -0.69
CHD2-228ENST00000637613 ASTLQ6HA08 431 aaPredicted RBP10.72□□□□□ -0.69
CHD2-228ENST00000637613 C7P10643 843 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms