Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 AL161658.1-201ENST00000623641 1967 ntBASIC25.41■■□□□ 1.66
PCDHGA3Q9Y5H0 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
PCDHGA3Q9Y5H0 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHGA3Q9Y5H0 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHGA3Q9Y5H0 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHGA3Q9Y5H0 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHGA3Q9Y5H0 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.37■■□□□ 1.65
PCDHGA3Q9Y5H0 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.37■■□□□ 1.65
PCDHGA3Q9Y5H0 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC25.37■■□□□ 1.65
PCDHGA3Q9Y5H0 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHGA3Q9Y5H0 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHGA3Q9Y5H0 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHGA3Q9Y5H0 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHGA3Q9Y5H0 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHGA3Q9Y5H0 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHGA3Q9Y5H0 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC25.35■■□□□ 1.65
PCDHGA3Q9Y5H0 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC25.35■■□□□ 1.65
PCDHGA3Q9Y5H0 LINC01971-201ENST00000617888 1048 ntBASIC25.35■■□□□ 1.65
PCDHGA3Q9Y5H0 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHGA3Q9Y5H0 MIR3648-2-201ENST00000581792 180 ntBASIC25.34■■□□□ 1.65
PCDHGA3Q9Y5H0 MIR3648-1-201ENST00000615959 180 ntBASIC25.34■■□□□ 1.65
PCDHGA3Q9Y5H0 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHGA3Q9Y5H0 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHGA3Q9Y5H0 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.33■■□□□ 1.65
PCDHGA3Q9Y5H0 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.33■■□□□ 1.65
PCDHGA3Q9Y5H0 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.32■■□□□ 1.64
PCDHGA3Q9Y5H0 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC25.32■■□□□ 1.64
PCDHGA3Q9Y5H0 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHGA3Q9Y5H0 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHGA3Q9Y5H0 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHGA3Q9Y5H0 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHGA3Q9Y5H0 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.31■■□□□ 1.64
PCDHGA3Q9Y5H0 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHGA3Q9Y5H0 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
PCDHGA3Q9Y5H0 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHGA3Q9Y5H0 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHGA3Q9Y5H0 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHGA3Q9Y5H0 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
PCDHGA3Q9Y5H0 DUX4L11-201ENST00000611504 1267 ntBASIC25.3■■□□□ 1.64
PCDHGA3Q9Y5H0 DUX4L12-201ENST00000614593 1267 ntBASIC25.3■■□□□ 1.64
PCDHGA3Q9Y5H0 DUX4L14-201ENST00000621227 1267 ntBASIC25.3■■□□□ 1.64
PCDHGA3Q9Y5H0 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.29■■□□□ 1.64
PCDHGA3Q9Y5H0 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC25.28■■□□□ 1.64
PCDHGA3Q9Y5H0 AC016575.1-201ENST00000607026 382 ntBASIC25.28■■□□□ 1.64
PCDHGA3Q9Y5H0 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHGA3Q9Y5H0 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHGA3Q9Y5H0 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHGA3Q9Y5H0 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC25.27■■□□□ 1.64
PCDHGA3Q9Y5H0 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.26■■□□□ 1.63
PCDHGA3Q9Y5H0 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA3Q9Y5H0 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.25■■□□□ 1.63
PCDHGA3Q9Y5H0 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHGA3Q9Y5H0 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
PCDHGA3Q9Y5H0 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHGA3Q9Y5H0 CR559946.2-201ENST00000623684 991 ntBASIC25.24■■□□□ 1.63
PCDHGA3Q9Y5H0 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHGA3Q9Y5H0 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHGA3Q9Y5H0 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHGA3Q9Y5H0 AC139426.1-201ENST00000568218 2529 ntBASIC25.23■■□□□ 1.63
PCDHGA3Q9Y5H0 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHGA3Q9Y5H0 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.22■■□□□ 1.63
PCDHGA3Q9Y5H0 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC25.22■■□□□ 1.63
PCDHGA3Q9Y5H0 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
PCDHGA3Q9Y5H0 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHGA3Q9Y5H0 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHGA3Q9Y5H0 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHGA3Q9Y5H0 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHGA3Q9Y5H0 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC25.2■■□□□ 1.63
PCDHGA3Q9Y5H0 AC120057.4-201ENST00000624722 1615 ntBASIC25.2■■□□□ 1.62
PCDHGA3Q9Y5H0 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.2■■□□□ 1.62
PCDHGA3Q9Y5H0 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHGA3Q9Y5H0 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PCDHGA3Q9Y5H0 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PCDHGA3Q9Y5H0 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PCDHGA3Q9Y5H0 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC25.19■■□□□ 1.62
PCDHGA3Q9Y5H0 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHGA3Q9Y5H0 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
PCDHGA3Q9Y5H0 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.16■■□□□ 1.62
PCDHGA3Q9Y5H0 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHGA3Q9Y5H0 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHGA3Q9Y5H0 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHGA3Q9Y5H0 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHGA3Q9Y5H0 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHGA3Q9Y5H0 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHGA3Q9Y5H0 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHGA3Q9Y5H0 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHGA3Q9Y5H0 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHGA3Q9Y5H0 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.13■■□□□ 1.61
PCDHGA3Q9Y5H0 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.13■■□□□ 1.61
PCDHGA3Q9Y5H0 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHGA3Q9Y5H0 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
PCDHGA3Q9Y5H0 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHGA3Q9Y5H0 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.12■■□□□ 1.61
PCDHGA3Q9Y5H0 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
PCDHGA3Q9Y5H0 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC25.11■■□□□ 1.61
PCDHGA3Q9Y5H0 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.1■■□□□ 1.61
PCDHGA3Q9Y5H0 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHGA3Q9Y5H0 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHGA3Q9Y5H0 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHGA3Q9Y5H0 DUX4L13-201ENST00000554103 1267 ntBASIC25.09■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms