Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CKS1BP61024 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CKS1BP61024 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CKS1BP61024 LTK-203ENST00000453182 2412 ntTSL 2 BASIC18.02■□□□□ 0.48
CKS1BP61024 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CKS1BP61024 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC18.02■□□□□ 0.48
CKS1BP61024 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CKS1BP61024 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CKS1BP61024 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC18.02■□□□□ 0.48
CKS1BP61024 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CKS1BP61024 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC18.01■□□□□ 0.47
CKS1BP61024 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CKS1BP61024 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC18.01■□□□□ 0.47
CKS1BP61024 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CKS1BP61024 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CKS1BP61024 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CKS1BP61024 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CKS1BP61024 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CKS1BP61024 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CKS1BP61024 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CKS1BP61024 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CKS1BP61024 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CKS1BP61024 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CKS1BP61024 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CKS1BP61024 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CKS1BP61024 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC17.98■□□□□ 0.47
CKS1BP61024 SHF-207ENST00000560540 2062 ntTSL 5 BASIC17.98■□□□□ 0.47
CKS1BP61024 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
CKS1BP61024 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CKS1BP61024 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC17.97■□□□□ 0.47
CKS1BP61024 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC17.97■□□□□ 0.47
CKS1BP61024 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CKS1BP61024 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC17.97■□□□□ 0.47
CKS1BP61024 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CKS1BP61024 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CKS1BP61024 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
CKS1BP61024 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CKS1BP61024 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CKS1BP61024 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
CKS1BP61024 ZNRF2P1-201ENST00000441407 443 ntBASIC17.95■□□□□ 0.46
CKS1BP61024 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC17.95■□□□□ 0.46
CKS1BP61024 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CKS1BP61024 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CKS1BP61024 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CKS1BP61024 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CKS1BP61024 PKM-203ENST00000389093 2279 ntTSL 5 BASIC17.94■□□□□ 0.46
CKS1BP61024 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CKS1BP61024 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CKS1BP61024 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CKS1BP61024 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CKS1BP61024 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CKS1BP61024 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CKS1BP61024 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CKS1BP61024 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC17.92■□□□□ 0.46
CKS1BP61024 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CKS1BP61024 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CKS1BP61024 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC17.91■□□□□ 0.46
CKS1BP61024 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CKS1BP61024 CREM-210ENST00000374721 2020 ntTSL 5 BASIC17.91■□□□□ 0.46
CKS1BP61024 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CKS1BP61024 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CKS1BP61024 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CKS1BP61024 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CKS1BP61024 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CKS1BP61024 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CKS1BP61024 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CKS1BP61024 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CKS1BP61024 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
CKS1BP61024 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CKS1BP61024 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CKS1BP61024 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CKS1BP61024 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CKS1BP61024 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CKS1BP61024 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CKS1BP61024 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CKS1BP61024 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CKS1BP61024 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC17.87■□□□□ 0.45
CKS1BP61024 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CKS1BP61024 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CKS1BP61024 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CKS1BP61024 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CKS1BP61024 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CKS1BP61024 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CKS1BP61024 EBPL-203ENST00000378270 579 ntTSL 2 BASIC17.85■□□□□ 0.45
CKS1BP61024 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CKS1BP61024 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC17.84■□□□□ 0.45
CKS1BP61024 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC17.84■□□□□ 0.45
CKS1BP61024 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC17.84■□□□□ 0.45
CKS1BP61024 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CKS1BP61024 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CKS1BP61024 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CKS1BP61024 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC17.83■□□□□ 0.45
CKS1BP61024 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CKS1BP61024 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CKS1BP61024 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CKS1BP61024 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CKS1BP61024 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CKS1BP61024 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CKS1BP61024 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CKS1BP61024 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms