Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
HMGCS2P54868 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
HMGCS2P54868 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.94■■■□□ 2.54
HMGCS2P54868 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
HMGCS2P54868 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
HMGCS2P54868 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
HMGCS2P54868 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.92■■■□□ 2.54
HMGCS2P54868 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
HMGCS2P54868 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
HMGCS2P54868 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
HMGCS2P54868 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
HMGCS2P54868 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
HMGCS2P54868 HSD17B1P1-201ENST00000590052 955 ntBASIC30.9■■■□□ 2.54
HMGCS2P54868 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC30.89■■■□□ 2.54
HMGCS2P54868 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.89■■■□□ 2.54
HMGCS2P54868 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
HMGCS2P54868 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
HMGCS2P54868 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.87■■■□□ 2.53
HMGCS2P54868 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC30.86■■■□□ 2.53
HMGCS2P54868 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC30.86■■■□□ 2.53
HMGCS2P54868 EI24-212ENST00000615917 1407 ntTSL 2 BASIC30.86■■■□□ 2.53
HMGCS2P54868 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
HMGCS2P54868 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
HMGCS2P54868 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
HMGCS2P54868 DUX4L13-201ENST00000554103 1267 ntBASIC30.84■■■□□ 2.53
HMGCS2P54868 DUX4L15-201ENST00000611059 1267 ntBASIC30.84■■■□□ 2.53
HMGCS2P54868 DUX4L23-201ENST00000615195 1269 ntBASIC30.84■■■□□ 2.53
HMGCS2P54868 DUX4L24-201ENST00000617576 1269 ntBASIC30.84■■■□□ 2.53
HMGCS2P54868 DUX4L22-201ENST00000618238 1269 ntBASIC30.84■■■□□ 2.53
HMGCS2P54868 DUX4L20-201ENST00000619712 1269 ntBASIC30.84■■■□□ 2.53
HMGCS2P54868 DUX4L21-201ENST00000622058 1269 ntBASIC30.84■■■□□ 2.53
HMGCS2P54868 DUX4L10-201ENST00000622460 1267 ntBASIC30.84■■■□□ 2.53
HMGCS2P54868 DUX4L25-201ENST00000624915 1269 ntBASIC30.84■■■□□ 2.53
HMGCS2P54868 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.83■■■□□ 2.53
HMGCS2P54868 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
HMGCS2P54868 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
HMGCS2P54868 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC30.8■■■□□ 2.52
HMGCS2P54868 METRNL-202ENST00000570778 967 ntTSL 5 BASIC30.8■■■□□ 2.52
HMGCS2P54868 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
HMGCS2P54868 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
HMGCS2P54868 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.79■■■□□ 2.52
HMGCS2P54868 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC30.79■■■□□ 2.52
HMGCS2P54868 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
HMGCS2P54868 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
HMGCS2P54868 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
HMGCS2P54868 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
HMGCS2P54868 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC30.78■■■□□ 2.52
HMGCS2P54868 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.78■■■□□ 2.52
HMGCS2P54868 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
HMGCS2P54868 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
HMGCS2P54868 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
HMGCS2P54868 ABHD17AP3-201ENST00000503096 1137 ntBASIC30.77■■■□□ 2.52
HMGCS2P54868 AL161658.1-201ENST00000623641 1967 ntBASIC30.77■■■□□ 2.52
HMGCS2P54868 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.76■■■□□ 2.52
HMGCS2P54868 HES6-205ENST00000409356 528 ntTSL 2 BASIC30.76■■■□□ 2.51
HMGCS2P54868 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC30.76■■■□□ 2.51
HMGCS2P54868 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
HMGCS2P54868 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
HMGCS2P54868 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
HMGCS2P54868 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
HMGCS2P54868 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.74■■■□□ 2.51
HMGCS2P54868 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
HMGCS2P54868 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC30.73■■■□□ 2.51
HMGCS2P54868 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
HMGCS2P54868 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
HMGCS2P54868 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.71■■■□□ 2.51
HMGCS2P54868 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC30.71■■■□□ 2.51
HMGCS2P54868 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
HMGCS2P54868 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
HMGCS2P54868 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.7■■■□□ 2.5
HMGCS2P54868 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.5
HMGCS2P54868 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC30.7■■■□□ 2.5
HMGCS2P54868 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
HMGCS2P54868 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
HMGCS2P54868 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.63■■■□□ 2.49
HMGCS2P54868 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.63■■■□□ 2.49
HMGCS2P54868 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
HMGCS2P54868 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
HMGCS2P54868 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC30.62■■■□□ 2.49
HMGCS2P54868 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.62■■■□□ 2.49
HMGCS2P54868 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
HMGCS2P54868 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
HMGCS2P54868 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.61■■■□□ 2.49
HMGCS2P54868 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
HMGCS2P54868 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC30.6■■■□□ 2.49
HMGCS2P54868 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.6■■■□□ 2.49
HMGCS2P54868 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC30.6■■■□□ 2.49
HMGCS2P54868 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.59■■■□□ 2.49
HMGCS2P54868 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC30.59■■■□□ 2.49
HMGCS2P54868 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
HMGCS2P54868 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.57■■■□□ 2.48
HMGCS2P54868 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
HMGCS2P54868 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
HMGCS2P54868 CHST11-202ENST00000546689 756 ntTSL 2 BASIC30.55■■■□□ 2.48
HMGCS2P54868 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC30.55■■■□□ 2.48
HMGCS2P54868 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.54■■■□□ 2.48
HMGCS2P54868 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
HMGCS2P54868 AC010864.1-201ENST00000609407 1511 ntBASIC30.54■■■□□ 2.48
HMGCS2P54868 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC30.54■■■□□ 2.48
HMGCS2P54868 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms