Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
TRIM13O60858 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
TRIM13O60858 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.83■■□□□ 1.73
TRIM13O60858 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
TRIM13O60858 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
TRIM13O60858 KLF16-203ENST00000592313 508 ntTSL 3 BASIC25.82■■□□□ 1.72
TRIM13O60858 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
TRIM13O60858 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
TRIM13O60858 AL133380.1-201ENST00000506013 324 ntBASIC25.81■■□□□ 1.72
TRIM13O60858 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC25.81■■□□□ 1.72
TRIM13O60858 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
TRIM13O60858 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
TRIM13O60858 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
TRIM13O60858 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
TRIM13O60858 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
TRIM13O60858 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
TRIM13O60858 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.79■■□□□ 1.72
TRIM13O60858 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
TRIM13O60858 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
TRIM13O60858 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
TRIM13O60858 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.78■■□□□ 1.72
TRIM13O60858 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
TRIM13O60858 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
TRIM13O60858 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
TRIM13O60858 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TRIM13O60858 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TRIM13O60858 DRD5P2-201ENST00000421395 2012 ntBASIC25.75■■□□□ 1.71
TRIM13O60858 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TRIM13O60858 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
TRIM13O60858 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.74■■□□□ 1.71
TRIM13O60858 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
TRIM13O60858 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
TRIM13O60858 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
TRIM13O60858 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC25.73■■□□□ 1.71
TRIM13O60858 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
TRIM13O60858 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC25.72■■□□□ 1.71
TRIM13O60858 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.71■■□□□ 1.71
TRIM13O60858 AC010864.1-201ENST00000609407 1511 ntBASIC25.71■■□□□ 1.71
TRIM13O60858 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC25.7■■□□□ 1.71
TRIM13O60858 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
TRIM13O60858 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
TRIM13O60858 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TRIM13O60858 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
TRIM13O60858 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
TRIM13O60858 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
TRIM13O60858 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC25.67■■□□□ 1.7
TRIM13O60858 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC25.66■■□□□ 1.7
TRIM13O60858 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
TRIM13O60858 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
TRIM13O60858 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC25.65■■□□□ 1.7
TRIM13O60858 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
TRIM13O60858 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
TRIM13O60858 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
TRIM13O60858 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
TRIM13O60858 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
TRIM13O60858 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.63■■□□□ 1.69
TRIM13O60858 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
TRIM13O60858 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
TRIM13O60858 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TRIM13O60858 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.62■■□□□ 1.69
TRIM13O60858 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TRIM13O60858 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
TRIM13O60858 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.6■■□□□ 1.69
TRIM13O60858 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
TRIM13O60858 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC25.59■■□□□ 1.69
TRIM13O60858 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC25.59■■□□□ 1.69
TRIM13O60858 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.58■■□□□ 1.69
TRIM13O60858 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
TRIM13O60858 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
TRIM13O60858 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TRIM13O60858 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
TRIM13O60858 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
TRIM13O60858 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
TRIM13O60858 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
TRIM13O60858 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
TRIM13O60858 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TRIM13O60858 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
TRIM13O60858 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.53■■□□□ 1.68
TRIM13O60858 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.53■■□□□ 1.68
TRIM13O60858 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
TRIM13O60858 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
TRIM13O60858 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.5■■□□□ 1.67
TRIM13O60858 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRIM13O60858 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRIM13O60858 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRIM13O60858 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRIM13O60858 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
TRIM13O60858 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRIM13O60858 AL121749.1-202ENST00000609313 2153 ntBASIC25.49■■□□□ 1.67
TRIM13O60858 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRIM13O60858 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRIM13O60858 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
TRIM13O60858 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
TRIM13O60858 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
TRIM13O60858 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
TRIM13O60858 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
TRIM13O60858 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
TRIM13O60858 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
TRIM13O60858 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
TRIM13O60858 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms