Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC15.95■□□□□ 0.141e-7■■□□□ 13.5
U2AF1Q01081 FNIP1-203ENST00000510461 3845 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.421e-7■■□□□ 13.5
U2AF1Q01081 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.261e-7■■□□□ 13.5
U2AF1Q01081 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.281e-7■■□□□ 13.5
U2AF1Q01081 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC6.62□□□□□ -1.351e-7■■□□□ 13.5
U2AF1Q01081 MAP1LC3B-206ENST00000564844 3085 ntTSL 1 (best)25.94■■□□□ 1.741e-6■■□□□ 13.5
U2AF1Q01081 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC23.34■■□□□ 1.331e-6■■□□□ 13.5
U2AF1Q01081 MAP1LC3B-208ENST00000570189 1259 ntTSL 1 (best)22.84■■□□□ 1.251e-6■■□□□ 13.5
U2AF1Q01081 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.841e-6■■□□□ 13.5
U2AF1Q01081 MAP1LC3B-205ENST00000564638 735 ntTSL 29.67□□□□□ -0.861e-6■■□□□ 13.5
U2AF1Q01081 ITIH3-201ENST00000416872 2220 ntTSL 2 BASIC14.44□□□□□ -0.16e-7■■□□□ 13.5
U2AF1Q01081 ITIH3-202ENST00000449956 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.626e-7■■□□□ 13.5
U2AF1Q01081 ITIH3-211ENST00000621946 3038 ntTSL 1 (best) BASIC10.77□□□□□ -0.696e-7■■□□□ 13.5
U2AF1Q01081 SON-203ENST00000381679 7860 ntTSL 5 BASIC16.4■□□□□ 0.221e-6■■□□□ 13.5
U2AF1Q01081 SON-201ENST00000300278 7477 ntTSL 1 (best) BASIC14.49□□□□□ -0.091e-6■■□□□ 13.5
U2AF1Q01081 SON-205ENST00000421541 1151 ntTSL 1 (best)6.05□□□□□ -1.441e-6■■□□□ 13.5
U2AF1Q01081 MORF4L2-204ENST00000422355 562 ntTSL 213.05□□□□□ -0.323e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-201ENST00000360458 1824 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.583e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-203ENST00000422154 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.63e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-210ENST00000451301 1830 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.743e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-209ENST00000442614 869 ntTSL 210.41□□□□□ -0.743e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-208ENST00000441076 1828 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.773e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-215ENST00000498064 451 ntTSL 29.41□□□□□ -0.93e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC9.15□□□□□ -0.953e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-207ENST00000434230 899 ntTSL 28.42□□□□□ -1.063e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-214ENST00000492116 582 ntTSL 27.27□□□□□ -1.253e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-202ENST00000418819 849 ntTSL 36.99□□□□□ -1.293e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-211ENST00000467755 370 ntTSL 1 (best)6.5□□□□□ -1.373e-8■■□□□ 13.5
U2AF1Q01081 MORF4L2-212ENST00000474653 573 ntTSL 25.58□□□□□ -1.527e-9■■□□□ 13.5
U2AF1Q01081 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.85e-9■■□□□ 13.5
U2AF1Q01081 SRSF4-206ENST00000605204 1399 ntTSL 1 (best)25.67■■□□□ 1.75e-9■■□□□ 13.5
U2AF1Q01081 SRSF4-202ENST00000466448 1264 ntAPPRIS ALT2 TSL 325.18■■□□□ 1.625e-9■■□□□ 13.5
U2AF1Q01081 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.365e-9■■□□□ 13.5
U2AF1Q01081 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.335e-9■■□□□ 13.5
U2AF1Q01081 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.193e-6■■□□□ 13.5
U2AF1Q01081 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC21.97■■□□□ 1.115e-9■■□□□ 13.5
U2AF1Q01081 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.13e-6■■□□□ 13.5
U2AF1Q01081 ANKZF1-220ENST00000486203 993 ntTSL 221.6■■□□□ 1.053e-6■■□□□ 13.5
U2AF1Q01081 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC21.04■□□□□ 0.961e-11■■□□□ 13.5
U2AF1Q01081 ANKZF1-225ENST00000494886 588 ntTSL 420.15■□□□□ 0.823e-6■■□□□ 13.5
U2AF1Q01081 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.673e-6■■□□□ 13.5
U2AF1Q01081 ANKZF1-214ENST00000467884 1090 ntTSL 518.87■□□□□ 0.613e-6■■□□□ 13.5
U2AF1Q01081 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.543e-6■■□□□ 13.5
U2AF1Q01081 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC18.08■□□□□ 0.483e-6■■□□□ 13.5
U2AF1Q01081 NIPA1-203ENST00000557930 582 ntTSL 218.02■□□□□ 0.483e-6■■□□□ 13.5
U2AF1Q01081 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC17.52■□□□□ 0.45e-9■■□□□ 13.5
U2AF1Q01081 ANKZF1-216ENST00000474225 900 ntTSL 317.42■□□□□ 0.383e-6■■□□□ 13.5
U2AF1Q01081 ANKZF1-226ENST00000496346 1290 ntTSL 217.42■□□□□ 0.383e-6■■□□□ 13.5
U2AF1Q01081 ANKZF1-222ENST00000490526 516 ntTSL 217.06■□□□□ 0.323e-6■■□□□ 13.5
U2AF1Q01081 ARNT-204ENST00000471844 3703 ntTSL 216.8■□□□□ 0.285e-9■■□□□ 13.5
U2AF1Q01081 ANKZF1-210ENST00000461731 1566 ntTSL 216.55■□□□□ 0.243e-6■■□□□ 13.5
U2AF1Q01081 NIPA1-205ENST00000560069 575 ntTSL 416.38■□□□□ 0.213e-6■■□□□ 13.5
U2AF1Q01081 PSMA6-206ENST00000554541 925 ntTSL 215.54■□□□□ 0.083e-6■■□□□ 13.5
U2AF1Q01081 ANKZF1-205ENST00000435521 576 ntTSL 414.9□□□□□ -0.023e-6■■□□□ 13.5
U2AF1Q01081 PSMB1-201ENST00000262193 928 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.043e-6■■□□□ 13.5
U2AF1Q01081 SRSF4-208ENST00000634348 8128 ntTSL 513.97□□□□□ -0.175e-9■■□□□ 13.5
U2AF1Q01081 ANKZF1-213ENST00000465550 2793 ntTSL 213.86□□□□□ -0.193e-6■■□□□ 13.5
U2AF1Q01081 PSMA6-211ENST00000555764 1002 ntTSL 2 BASIC13.76□□□□□ -0.213e-6■■□□□ 13.5
U2AF1Q01081 NIPA1-204ENST00000559448 2799 ntTSL 213.28□□□□□ -0.283e-6■■□□□ 13.5
U2AF1Q01081 SRSF4-205ENST00000497015 516 ntTSL 212.87□□□□□ -0.355e-9■■□□□ 13.5
U2AF1Q01081 KPNA2-201ENST00000330459 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.393e-6■■□□□ 13.5
U2AF1Q01081 ARNT-208ENST00000505755 2427 ntTSL 2 BASIC11.98□□□□□ -0.495e-9■■□□□ 13.5
U2AF1Q01081 ARNT-206ENST00000497108 546 ntTSL 411.95□□□□□ -0.55e-9■■□□□ 13.5
U2AF1Q01081 SRSF5-219ENST00000557460 939 ntTSL 511.6□□□□□ -0.553e-6■■□□□ 13.5
U2AF1Q01081 ARNT-207ENST00000504358 571 ntTSL 411.02□□□□□ -0.655e-9■■□□□ 13.5
U2AF1Q01081 PSMA6-202ENST00000540871 912 ntTSL 2 BASIC10.93□□□□□ -0.663e-6■■□□□ 13.5
U2AF1Q01081 PSMA6-209ENST00000554961 814 ntTSL 210.48□□□□□ -0.733e-6■■□□□ 13.5
U2AF1Q01081 ARNT-209ENST00000505979 570 ntTSL 210.38□□□□□ -0.755e-9■■□□□ 13.5
U2AF1Q01081 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.83e-6■■□□□ 13.5
U2AF1Q01081 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC9.88□□□□□ -0.833e-6■■□□□ 13.5
U2AF1Q01081 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.895e-9■■□□□ 13.5
U2AF1Q01081 CDC73-202ENST00000477868 764 ntTSL 39.46□□□□□ -0.93e-6■■□□□ 13.5
U2AF1Q01081 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC9.24□□□□□ -0.933e-6■■□□□ 13.5
U2AF1Q01081 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC9.24□□□□□ -0.933e-6■■□□□ 13.5
U2AF1Q01081 KPNA2-207ENST00000584026 561 ntTSL 49.07□□□□□ -0.963e-6■■□□□ 13.5
U2AF1Q01081 PSMA6-205ENST00000554457 4730 nt8.97□□□□□ -0.973e-6■■□□□ 13.5
U2AF1Q01081 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.023e-6■■□□□ 13.5
U2AF1Q01081 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC7.29□□□□□ -1.243e-6■■□□□ 13.5
U2AF1Q01081 KPNA2-205ENST00000583269 611 ntTSL 46.82□□□□□ -1.323e-6■■□□□ 13.5
U2AF1Q01081 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.48□□□□□ -1.373e-6■■□□□ 13.5
U2AF1Q01081 PSMB1-202ENST00000462957 1939 ntTSL 26.17□□□□□ -1.423e-6■■□□□ 13.5
U2AF1Q01081 PITHD1-203ENST00000415372 754 ntTSL 24.48□□□□□ -1.695e-9■■□□□ 13.5
U2AF1Q01081 KPNA2-203ENST00000579754 569 ntTSL 24.02□□□□□ -1.773e-6■■□□□ 13.5
U2AF1Q01081 PSMA6-213ENST00000556221 423 ntTSL 33.76□□□□□ -1.813e-6■■□□□ 13.5
U2AF1Q01081 RAD21-201ENST00000297338 3749 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.572e-12■■□□□ 13.5
U2AF1Q01081 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.72□□□□□ -1.333e-7■■□□□ 13.5
U2AF1Q01081 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC6.22□□□□□ -1.413e-7■■□□□ 13.5
U2AF1Q01081 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.523e-7■■□□□ 13.5
U2AF1Q01081 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC34.18■■■■□ 3.061e-7■■□□□ 13.4
U2AF1Q01081 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.061e-7■■□□□ 13.4
U2AF1Q01081 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC20.88■□□□□ 0.931e-7■■□□□ 13.4
U2AF1Q01081 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC18.97■□□□□ 0.631e-7■■□□□ 13.4
U2AF1Q01081 AGFG1-203ENST00000409171 1783 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.161e-7■■□□□ 13.4
U2AF1Q01081 AGFG1-206ENST00000456594 1065 ntTSL 55.77□□□□□ -1.491e-7■■□□□ 13.4
U2AF1Q01081 SNHG1-203ENST00000537024 532 ntTSL 55□□□□□ -1.614e-8■■□□□ 13.4
U2AF1Q01081 SNHG1-202ENST00000535689 550 ntTSL 24.36□□□□□ -1.714e-8■■□□□ 13.4
U2AF1Q01081 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.03□□□□□ -1.764e-8■■□□□ 13.4
U2AF1Q01081 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC25.65■■□□□ 1.72e-11■■□□□ 13.4
U2AF1Q01081 GCKR-203ENST00000417872 568 ntTSL 418.35■□□□□ 0.536e-8■■□□□ 13.4
U2AF1Q01081 PIM1-203ENST00000479509 675 ntTSL 216.9■□□□□ 0.31e-10■■□□□ 13.4
Retrieved 100 of 10,096 protein–RNA pairs in 82 ms