Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.9■□□□□ 0.94
COL4A2P08572 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A2P08572 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A2P08572 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A2P08572 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.9■□□□□ 0.94
COL4A2P08572 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A2P08572 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.9■□□□□ 0.94
COL4A2P08572 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.9■□□□□ 0.94
COL4A2P08572 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.9■□□□□ 0.94
COL4A2P08572 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.9■□□□□ 0.94
COL4A2P08572 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A2P08572 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.9■□□□□ 0.94
COL4A2P08572 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.9■□□□□ 0.94
COL4A2P08572 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A2P08572 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
COL4A2P08572 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.9■□□□□ 0.94
COL4A2P08572 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A2P08572 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.9■□□□□ 0.94
COL4A2P08572 RCN1P1-201ENST00000400413 996 ntBASIC20.9■□□□□ 0.94
COL4A2P08572 TSPY15P-201ENST00000457163 923 ntBASIC20.9■□□□□ 0.94
COL4A2P08572 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.9■□□□□ 0.94
COL4A2P08572 MIR4785-201ENST00000585005 73 ntBASIC20.9■□□□□ 0.94
COL4A2P08572 AC120498.8-201ENST00000614275 531 ntBASIC20.9■□□□□ 0.94
COL4A2P08572 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.89■□□□□ 0.94
COL4A2P08572 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL4A2P08572 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A2P08572 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A2P08572 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
COL4A2P08572 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.89■□□□□ 0.93
COL4A2P08572 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A2P08572 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A2P08572 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A2P08572 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
COL4A2P08572 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.89■□□□□ 0.93
COL4A2P08572 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.89■□□□□ 0.93
COL4A2P08572 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
COL4A2P08572 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A2P08572 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.89■□□□□ 0.93
COL4A2P08572 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A2P08572 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A2P08572 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A2P08572 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A2P08572 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A2P08572 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A2P08572 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A2P08572 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.88■□□□□ 0.93
COL4A2P08572 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.88■□□□□ 0.93
COL4A2P08572 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.88■□□□□ 0.93
COL4A2P08572 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
COL4A2P08572 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A2P08572 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A2P08572 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.88■□□□□ 0.93
COL4A2P08572 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A2P08572 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A2P08572 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A2P08572 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL4A2P08572 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL4A2P08572 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.87■□□□□ 0.93
COL4A2P08572 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.87■□□□□ 0.93
COL4A2P08572 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.87■□□□□ 0.93
COL4A2P08572 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
COL4A2P08572 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL4A2P08572 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL4A2P08572 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL4A2P08572 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
COL4A2P08572 KRT18P21-201ENST00000515767 1272 ntBASIC20.87■□□□□ 0.93
COL4A2P08572 REXO1L12P-201ENST00000622156 912 ntBASIC20.87■□□□□ 0.93
COL4A2P08572 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A2P08572 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A2P08572 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A2P08572 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A2P08572 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
COL4A2P08572 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A2P08572 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A2P08572 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.86■□□□□ 0.93
COL4A2P08572 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A2P08572 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
COL4A2P08572 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A2P08572 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A2P08572 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.86■□□□□ 0.93
COL4A2P08572 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A2P08572 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A2P08572 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A2P08572 AL135905.2-201ENST00000584934 1404 ntBASIC20.86■□□□□ 0.93
COL4A2P08572 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A2P08572 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A2P08572 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A2P08572 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A2P08572 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms