Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX2P48431 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.06■□□□□ 0.48
SOX2P48431 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX2P48431 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SOX2P48431 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX2P48431 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SOX2P48431 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.06■□□□□ 0.48
SOX2P48431 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SOX2P48431 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SOX2P48431 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SOX2P48431 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.05■□□□□ 0.48
SOX2P48431 BX005040.4-201ENST00000637145 1518 ntBASIC18.05■□□□□ 0.48
SOX2P48431 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.05■□□□□ 0.48
SOX2P48431 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.05■□□□□ 0.48
SOX2P48431 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC18.05■□□□□ 0.48
SOX2P48431 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.05■□□□□ 0.48
SOX2P48431 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SOX2P48431 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.05■□□□□ 0.48
SOX2P48431 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 AC105233.4-201ENST00000642045 216 ntBASIC18.05■□□□□ 0.48
SOX2P48431 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.05■□□□□ 0.48
SOX2P48431 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.05■□□□□ 0.48
SOX2P48431 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.05■□□□□ 0.48
SOX2P48431 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX2P48431 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SOX2P48431 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SOX2P48431 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SOX2P48431 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SOX2P48431 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SOX2P48431 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SOX2P48431 AC024257.2-201ENST00000549699 147 ntBASIC18.04■□□□□ 0.48
SOX2P48431 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.04■□□□□ 0.48
SOX2P48431 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SOX2P48431 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.04■□□□□ 0.48
SOX2P48431 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SOX2P48431 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SOX2P48431 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SOX2P48431 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.04■□□□□ 0.48
SOX2P48431 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SOX2P48431 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.04■□□□□ 0.48
SOX2P48431 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SOX2P48431 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.03■□□□□ 0.48
SOX2P48431 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.03■□□□□ 0.48
SOX2P48431 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.03■□□□□ 0.48
SOX2P48431 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.03■□□□□ 0.48
SOX2P48431 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.03■□□□□ 0.48
SOX2P48431 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 AC008764.7-201ENST00000593779 1081 ntBASIC18.03■□□□□ 0.48
SOX2P48431 AL136162.1-201ENST00000607711 1078 ntBASIC18.03■□□□□ 0.48
SOX2P48431 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.03■□□□□ 0.48
SOX2P48431 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.03■□□□□ 0.48
SOX2P48431 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.03■□□□□ 0.48
SOX2P48431 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.03■□□□□ 0.48
SOX2P48431 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX2P48431 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX2P48431 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX2P48431 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX2P48431 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SOX2P48431 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SOX2P48431 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX2P48431 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.02■□□□□ 0.48
SOX2P48431 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.02■□□□□ 0.48
SOX2P48431 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SOX2P48431 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX2P48431 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX2P48431 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX2P48431 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX2P48431 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX2P48431 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SOX2P48431 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.02■□□□□ 0.48
SOX2P48431 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SOX2P48431 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC18.02■□□□□ 0.48
SOX2P48431 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.02■□□□□ 0.48
SOX2P48431 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SOX2P48431 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms